Wall clock time and date at job start Mon Mar 30 2020 04:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47336 * 239.99862 * 3 2 1 5 5 H 1.48491 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46960 * 120.00184 * 3 2 1 7 7 C 1.37880 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46987 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.32840 * 55.21353 * 10 9 7 12 12 C 1.53350 * 110.02643 * 295.53421 * 10 9 7 13 13 N 1.46030 * 110.79635 * 291.20535 * 12 10 9 14 14 C 1.34791 * 121.22511 * 321.99012 * 13 12 10 15 15 O 1.21593 * 120.42698 * 182.67862 * 14 13 12 16 16 C 1.47575 * 119.15488 * 2.69713 * 14 13 12 17 17 C 1.39474 * 121.09843 * 197.68752 * 16 14 13 18 18 C 1.37729 * 119.67910 * 179.60988 * 17 16 14 19 19 C 1.39247 * 120.10525 * 0.28526 * 18 17 16 20 20 N 1.39044 * 119.86238 * 179.97438 * 19 18 17 21 21 C 1.39290 * 120.26893 * 0.02562 * 19 18 17 22 22 C 1.37427 * 119.88557 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99960 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47317 * 59.99773 * 9 7 2 25 25 H 1.09001 * 109.47129 * 299.99995 * 9 7 2 26 26 H 1.08995 * 109.55144 * 170.70498 * 12 10 9 27 27 H 1.09002 * 108.97549 * 51.33876 * 12 10 9 28 28 H 0.97004 * 119.39075 * 141.97170 * 13 12 10 29 29 H 1.08002 * 120.16369 * 359.89267 * 17 16 14 30 30 H 1.07999 * 119.95017 * 180.26385 * 18 17 16 31 31 H 0.96997 * 120.00181 * 0.02562 * 20 19 18 32 32 H 0.96999 * 119.99656 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.05834 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9256 -3.5551 0.8442 12 6 3.0585 -3.6577 -1.3006 13 7 2.2145 -4.0025 -2.4413 14 6 1.2497 -4.9383 -2.3392 15 8 0.5876 -5.2487 -3.3107 16 6 1.0069 -5.5810 -1.0332 17 6 0.3018 -6.7809 -0.9407 18 6 0.0990 -7.3594 0.2926 19 6 0.5908 -6.7453 1.4415 20 7 0.3827 -7.3335 2.6841 21 6 1.2895 -5.5437 1.3511 22 6 1.4950 -4.9618 0.1232 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 3.8708 -4.3805 -1.2251 27 1 3.4776 -2.6632 -1.4531 28 1 2.3504 -3.5495 -3.2883 29 1 -0.0793 -7.2564 -1.8324 30 1 -0.4426 -8.2906 0.3688 31 1 -0.1039 -8.1701 2.7493 32 1 0.7248 -6.9076 3.4856 33 1 1.6698 -5.0706 2.2443 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309536213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:51 Heat of formation + Delta-G solvation = -26.750530 kcal Electronic energy + Delta-G solvation = -17567.003584 eV Core-core repulsion = 14784.330631 eV Total energy + Delta-G solvation = -2782.672953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19769 -38.03005 -36.23829 -34.02096 -33.09393 -31.70251 -29.54516 -28.62360 -26.46506 -24.04931 -22.92663 -22.15680 -20.65619 -18.49775 -17.23080 -17.07797 -16.11959 -16.10873 -15.63363 -14.91110 -14.45545 -14.30231 -13.65396 -13.22955 -13.18965 -12.91988 -12.66679 -12.34719 -12.15300 -11.59174 -11.14026 -10.99097 -10.83784 -10.48954 -10.31197 -10.12157 -9.63586 -9.40099 -9.10583 -8.51864 -8.40554 -8.28473 -7.35734 -6.04695 -4.09139 1.46948 1.77596 3.28908 3.34945 3.35355 3.38964 3.89207 3.94001 4.31934 4.41355 5.05896 5.19097 5.25894 5.30647 5.45842 5.63073 5.79409 5.84135 5.88281 6.20332 6.37285 6.39863 6.49049 6.62483 6.82037 6.92213 7.06031 7.42592 7.56456 7.58343 7.71068 7.75618 7.85345 7.92997 8.29740 8.83492 8.96331 9.54933 11.06018 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.007116 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.102842 B = 3933.601279 C = 4589.584801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.072 4.072 11 H 0.087 0.913 12 C 0.125 3.875 13 N -0.714 5.714 14 C 0.575 3.425 15 O -0.564 6.564 16 C -0.199 4.199 17 C -0.010 4.010 18 C -0.225 4.225 19 C 0.240 3.760 20 N -0.874 5.874 21 C -0.206 4.206 22 C 0.026 3.974 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.399 0.601 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.396 0.604 32 H 0.398 0.602 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -12.603 3.799 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.001 3.999 10 C -0.091 4.091 11 H 0.106 0.894 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.364 3.636 15 O -0.444 6.444 16 C -0.204 4.204 17 C -0.030 4.030 18 C -0.248 4.248 19 C 0.134 3.866 20 N -0.412 5.412 21 C -0.228 4.228 22 C 0.025 3.975 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.234 0.766 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.224 0.776 32 H 0.226 0.774 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.778 -12.710 3.464 13.704 hybrid contribution 0.334 1.100 0.238 1.174 sum 4.112 -11.609 3.703 12.861 Atomic orbital electron populations 1.69963 1.06099 1.26846 1.49900 1.25009 0.94792 0.99209 0.95192 0.86668 0.79568 0.83234 0.78575 1.20210 1.21337 1.20240 1.21114 0.92833 0.90633 1.51669 0.92406 1.19083 0.93205 0.89596 0.98031 1.20850 0.98453 0.92596 0.97176 0.89444 1.21489 0.91626 1.01356 0.85435 1.45560 1.35933 1.40270 1.14702 1.18100 0.78944 0.78630 0.87914 1.90727 1.49039 1.64801 1.39864 1.19479 1.08711 0.99221 0.93002 1.20782 0.92323 0.92774 0.97089 1.20393 1.09973 1.03069 0.91347 1.17925 0.91494 0.91377 0.85816 1.42383 1.64742 1.28320 1.05708 1.20317 1.07861 0.96700 0.97949 1.20095 0.91909 0.93887 0.91630 0.92825 0.95912 0.96140 0.93297 0.88427 0.76576 0.85350 0.86215 0.77591 0.77352 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.75 8.30 -34.44 -0.29 -14.03 16 8 H 0.06 1.42 7.08 -52.48 -0.37 1.04 16 9 C 0.04 0.94 4.41 -27.88 -0.12 0.81 16 10 C -0.07 -1.38 2.31 -91.65 -0.21 -1.60 16 11 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 12 C 0.13 2.16 6.38 -4.11 -0.03 2.13 16 13 N -0.71 -13.18 5.25 -61.47 -0.32 -13.50 16 14 C 0.57 11.83 7.59 -12.45 -0.09 11.73 16 15 O -0.56 -12.93 17.44 5.28 0.09 -12.84 16 16 C -0.20 -3.78 5.78 -104.98 -0.61 -4.39 16 17 C -0.01 -0.17 9.63 -39.31 -0.38 -0.54 16 18 C -0.23 -3.17 9.87 -39.39 -0.39 -3.56 16 19 C 0.24 3.32 6.75 -83.82 -0.57 2.75 16 20 N -0.87 -8.48 9.05 32.43 0.29 -8.18 16 21 C -0.21 -3.27 9.55 -39.49 -0.38 -3.65 16 22 C 0.03 0.48 4.92 -104.34 -0.51 -0.03 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.63 7.69 -51.93 -0.40 0.23 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 1.69 6.72 -51.93 -0.35 1.34 16 28 H 0.40 6.75 8.92 -40.82 -0.36 6.39 16 29 H 0.13 2.01 7.84 -52.49 -0.41 1.60 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.40 2.93 8.83 -40.82 -0.36 2.57 16 32 H 0.40 3.24 8.83 -40.82 -0.36 2.88 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -32.60 281.53 -7.51 -40.11 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.86 Total: 8.72 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.67 Total: -8.81 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.71 Total: -47.25 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.60 -7.51 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.360 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds