Wall clock time and date at job start Mon Mar 30 2020 04:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47336 * 239.99862 * 3 2 1 5 5 H 1.48491 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46960 * 120.00184 * 3 2 1 7 7 C 1.37880 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46987 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.32840 * 55.21353 * 10 9 7 12 12 C 1.53350 * 110.02643 * 295.53421 * 10 9 7 13 13 N 1.46030 * 110.79635 * 291.20535 * 12 10 9 14 14 C 1.34791 * 121.22511 * 321.99012 * 13 12 10 15 15 O 1.21593 * 120.42698 * 182.67862 * 14 13 12 16 16 C 1.47575 * 119.15488 * 2.69713 * 14 13 12 17 17 C 1.39474 * 121.09843 * 197.68752 * 16 14 13 18 18 C 1.37729 * 119.67910 * 179.60988 * 17 16 14 19 19 C 1.39247 * 120.10525 * 0.28526 * 18 17 16 20 20 N 1.39044 * 119.86238 * 179.97438 * 19 18 17 21 21 C 1.39290 * 120.26893 * 0.02562 * 19 18 17 22 22 C 1.37427 * 119.88557 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99960 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47317 * 59.99773 * 9 7 2 25 25 H 1.09001 * 109.47129 * 299.99995 * 9 7 2 26 26 H 1.08995 * 109.55144 * 170.70498 * 12 10 9 27 27 H 1.09002 * 108.97549 * 51.33876 * 12 10 9 28 28 H 0.97004 * 119.39075 * 141.97170 * 13 12 10 29 29 H 1.08002 * 120.16369 * 359.89267 * 17 16 14 30 30 H 1.07999 * 119.95017 * 180.26385 * 18 17 16 31 31 H 0.96997 * 120.00181 * 0.02562 * 20 19 18 32 32 H 0.96999 * 119.99656 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.05834 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9256 -3.5551 0.8442 12 6 3.0585 -3.6577 -1.3006 13 7 2.2145 -4.0025 -2.4413 14 6 1.2497 -4.9383 -2.3392 15 8 0.5876 -5.2487 -3.3107 16 6 1.0069 -5.5810 -1.0332 17 6 0.3018 -6.7809 -0.9407 18 6 0.0990 -7.3594 0.2926 19 6 0.5908 -6.7453 1.4415 20 7 0.3827 -7.3335 2.6841 21 6 1.2895 -5.5437 1.3511 22 6 1.4950 -4.9618 0.1232 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 3.8708 -4.3805 -1.2251 27 1 3.4776 -2.6632 -1.4531 28 1 2.3504 -3.5495 -3.2883 29 1 -0.0793 -7.2564 -1.8324 30 1 -0.4426 -8.2906 0.3688 31 1 -0.1039 -8.1701 2.7493 32 1 0.7248 -6.9076 3.4856 33 1 1.6698 -5.0706 2.2443 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309536213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:51 Heat of formation + Delta-G solvation = -50.673602 kcal Electronic energy + Delta-G solvation = -17568.040966 eV Core-core repulsion = 14784.330631 eV Total energy + Delta-G solvation = -2783.710335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59292 -39.36924 -37.77391 -35.17140 -35.01659 -33.29545 -31.06365 -29.81918 -28.23393 -25.71329 -24.20729 -23.71722 -22.15447 -19.84956 -18.81067 -18.41010 -17.85809 -17.31637 -16.98244 -16.50141 -16.21993 -15.68876 -14.96424 -14.68268 -14.56764 -14.39821 -14.27184 -13.93037 -13.50255 -13.13789 -12.94636 -12.75255 -12.47383 -12.04559 -11.87980 -11.69380 -11.30827 -11.11578 -10.82823 -10.52089 -9.95656 -9.65794 -8.45139 -8.14912 -6.26179 0.15742 0.53394 1.44488 1.46632 1.53947 1.96029 2.43735 2.51453 2.94876 3.03041 3.19359 3.80324 3.82468 3.95378 4.15202 4.36957 4.45239 4.55852 4.61586 4.92754 4.94209 5.09126 5.16520 5.31096 5.38804 5.50949 5.52539 5.73943 5.85536 5.87296 6.02289 6.23041 6.36157 6.55231 6.90387 7.00832 7.32101 7.43222 8.96710 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.007116 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.102842 B = 3933.601279 C = 4589.584801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.050 3.950 10 C -0.065 4.065 11 H 0.105 0.895 12 C 0.126 3.874 13 N -0.713 5.713 14 C 0.563 3.437 15 O -0.602 6.602 16 C -0.233 4.233 17 C -0.018 4.018 18 C -0.218 4.218 19 C 0.253 3.747 20 N -0.851 5.851 21 C -0.216 4.216 22 C 0.010 3.990 23 H 0.260 0.740 24 H -0.019 1.019 25 H -0.013 1.013 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.403 0.597 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.412 0.588 32 H 0.410 0.590 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -13.692 5.492 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.096 0.904 9 C 0.013 3.987 10 C -0.084 4.084 11 H 0.123 0.877 12 C 0.003 3.997 13 N -0.362 5.362 14 C 0.354 3.646 15 O -0.486 6.486 16 C -0.238 4.238 17 C -0.038 4.038 18 C -0.241 4.241 19 C 0.143 3.857 20 N -0.389 5.389 21 C -0.238 4.238 22 C 0.008 3.992 23 H 0.069 0.931 24 H -0.001 1.001 25 H 0.005 0.995 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.238 0.762 29 H 0.148 0.852 30 H 0.173 0.827 31 H 0.243 0.757 32 H 0.240 0.760 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.315 -13.821 5.213 15.698 hybrid contribution -0.187 1.327 -0.174 1.351 sum 5.129 -12.494 5.039 14.415 Atomic orbital electron populations 1.70138 1.08147 1.27573 1.51928 1.25982 0.95520 1.03404 0.95027 0.85530 0.78134 0.78176 0.79375 1.18993 1.21994 1.18722 1.21609 0.93910 0.91132 1.49887 0.90406 1.18826 0.93488 0.92012 0.94371 1.20686 0.97606 0.91141 0.98994 0.87673 1.21582 0.91752 1.02380 0.84002 1.45620 1.35606 1.39651 1.15335 1.18540 0.78808 0.78827 0.88390 1.90679 1.50496 1.66293 1.41160 1.19523 1.11238 1.00786 0.92262 1.20943 0.92096 0.92274 0.98448 1.20718 1.09189 1.03900 0.90264 1.17964 0.89915 0.90501 0.87276 1.42366 1.63472 1.28475 1.04632 1.20501 1.08285 0.97587 0.97460 1.20014 0.92926 0.93769 0.92497 0.93141 1.00111 0.99451 0.89765 0.88481 0.76171 0.85227 0.82735 0.75718 0.76026 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.53 -27.71 8.30 25.60 0.21 -27.50 16 8 H 0.08 3.69 7.08 -2.91 -0.02 3.67 16 9 C 0.05 2.55 4.41 29.85 0.13 2.68 16 10 C -0.07 -2.50 2.31 -11.46 -0.03 -2.53 16 11 H 0.11 3.58 8.07 -2.39 -0.02 3.57 16 12 C 0.13 4.25 6.38 86.59 0.55 4.80 16 13 N -0.71 -26.79 5.25 -466.64 -2.45 -29.23 16 14 C 0.56 23.95 7.59 86.70 0.66 24.61 16 15 O -0.60 -28.83 17.44 -4.01 -0.07 -28.90 16 16 C -0.23 -8.92 5.78 -20.10 -0.12 -9.04 16 17 C -0.02 -0.58 9.63 22.45 0.22 -0.36 16 18 C -0.22 -5.56 9.87 22.39 0.22 -5.34 16 19 C 0.25 6.24 6.75 38.49 0.26 6.50 16 20 N -0.85 -13.07 9.05 -51.32 -0.46 -13.53 16 21 C -0.22 -6.47 9.55 22.33 0.21 -6.26 16 22 C 0.01 0.35 4.92 -19.68 -0.10 0.25 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.02 -1.15 7.69 -2.39 -0.02 -1.17 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.10 3.25 6.72 -2.39 -0.02 3.24 16 28 H 0.40 14.02 8.92 -92.71 -0.83 13.19 16 29 H 0.13 4.08 7.84 -2.91 -0.02 4.05 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.41 4.18 8.83 -92.71 -0.82 3.36 16 32 H 0.41 5.00 8.83 -92.71 -0.82 4.18 16 33 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -73.19 281.53 0.72 -72.47 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -1.30 Total: 23.11 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 2.69 Total: -11.82 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -2.63 Total: -99.58 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.07 Total: -28.90 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.19 0.72 -72.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.800 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds