Wall clock time and date at job start Mon Mar 30 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47064 * 66.09179 * 3 2 1 5 5 O 1.42901 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.35898 * 117.00427 * 179.97438 * 5 4 3 7 7 C 1.38757 * 120.05301 * 359.97438 * 6 5 4 8 8 C 1.38118 * 119.94403 * 180.02562 * 7 6 5 9 9 C 1.38291 * 120.05591 * 0.02808 * 8 7 6 10 10 C 1.38246 * 120.11171 * 359.95422 * 9 8 7 11 11 C 1.50693 * 119.97010 * 180.02562 * 10 9 8 12 12 H 1.09010 * 109.46918 * 199.99805 * 11 10 9 13 13 N 1.46898 * 109.47183 * 319.99567 * 11 10 9 14 14 C 1.50696 * 109.47459 * 80.00040 * 11 10 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.38164 * 120.05445 * 0.27316 * 10 9 8 23 23 H 1.08997 * 109.47429 * 306.08502 * 3 2 1 24 24 H 1.09008 * 109.46636 * 186.08839 * 3 2 1 25 25 H 1.08997 * 109.47551 * 59.99397 * 4 3 2 26 26 H 1.09008 * 109.47116 * 299.99366 * 4 3 2 27 27 H 1.07998 * 120.02832 * 0.02562 * 7 6 5 28 28 H 1.08003 * 119.97484 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.94381 * 179.97438 * 9 8 7 30 30 H 1.00899 * 111.00188 * 296.04594 * 13 11 10 31 31 H 1.00896 * 111.00080 * 60.00784 * 13 11 10 32 32 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.03077 * 179.74457 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5837 -1.3187 5 8 4.5472 -0.5825 -1.3189 6 6 5.1645 -1.0734 -2.4257 7 6 4.4101 -1.5471 -3.4896 8 6 5.0398 -2.0459 -4.6131 9 6 6.4209 -2.0741 -4.6780 10 6 7.1748 -1.6025 -3.6195 11 6 8.6795 -1.6342 -3.6939 12 1 9.0944 -1.5709 -2.6878 13 7 9.1123 -2.8886 -4.3239 14 6 9.1668 -0.4666 -4.5125 15 1 8.4578 0.2287 -4.9369 16 6 10.5179 -0.2865 -4.7206 17 7 11.3814 -1.1335 -4.2042 18 14 11.1219 1.1604 -5.7360 19 1 11.2077 0.7615 -7.1638 20 1 10.1734 2.2944 -5.5950 21 1 12.4646 1.5755 -5.2564 22 6 6.5497 -1.1068 -2.4915 23 1 2.9717 -0.6044 0.8305 24 1 2.9708 1.0228 0.1090 25 1 2.7546 0.0214 -2.1491 26 1 2.7554 -1.6058 -1.4277 27 1 3.3315 -1.5257 -3.4392 28 1 4.4531 -2.4144 -5.4417 29 1 6.9114 -2.4650 -5.5573 30 1 8.8536 -3.6845 -3.7602 31 1 8.7406 -2.9710 -5.2583 32 1 11.0677 -1.8846 -3.6766 33 1 7.1390 -0.7422 -1.6631 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309562261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:55 Heat of formation + Delta-G solvation = 7.381024 kcal Electronic energy + Delta-G solvation = -16615.445121 eV Core-core repulsion = 13834.252223 eV Total energy + Delta-G solvation = -2781.192898 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99222 -37.90063 -36.95532 -34.64987 -32.54785 -31.47085 -30.10612 -28.76926 -25.79878 -24.72597 -22.49833 -22.14995 -20.22221 -18.33063 -17.13638 -16.61121 -16.52168 -16.02948 -15.52644 -14.67190 -14.51420 -14.20242 -13.83468 -13.58037 -13.26805 -13.06720 -12.90847 -12.74013 -12.26503 -11.91237 -11.79149 -11.57770 -10.98006 -10.81073 -10.76357 -10.68746 -10.17046 -10.03409 -8.96765 -8.35566 -8.12688 -7.85267 -7.50460 -6.19260 -4.02682 1.81030 1.85691 2.19565 2.37965 3.01896 3.47995 3.50940 3.66619 3.90585 4.21898 4.50714 4.53450 4.61266 4.87737 5.11132 5.21347 5.30092 5.33376 5.43949 5.65013 5.80267 5.91278 6.07866 6.11687 6.43886 6.62467 6.83823 6.87469 7.12299 7.14356 7.37017 7.63944 7.95667 8.27466 8.63723 8.74046 9.04049 9.80806 11.20819 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.004392 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.002755 B = 6374.319800 C = 6659.795612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.212 3.788 3 C -0.025 4.025 4 C 0.065 3.935 5 O -0.314 6.314 6 C 0.122 3.878 7 C -0.231 4.231 8 C -0.085 4.085 9 C -0.153 4.153 10 C -0.028 4.028 11 C 0.236 3.764 12 H 0.040 0.960 13 N -0.828 5.828 14 C -0.608 4.608 15 H 0.047 0.953 16 C 0.038 3.962 17 N -0.891 5.891 18 Si 1.067 2.933 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.149 4.149 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.303 0.697 31 H 0.327 0.673 32 H 0.290 0.710 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 -0.570 4.939 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.106 4.106 3 C -0.065 4.065 4 C -0.012 4.012 5 O -0.228 6.228 6 C 0.078 3.922 7 C -0.250 4.250 8 C -0.104 4.104 9 C -0.172 4.172 10 C -0.030 4.030 11 C 0.127 3.873 12 H 0.058 0.942 13 N -0.356 5.356 14 C -0.647 4.647 15 H 0.066 0.934 16 C -0.171 4.171 17 N -0.525 5.525 18 Si 0.896 3.104 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.168 4.168 23 H 0.140 0.860 24 H 0.140 0.860 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.292 0.511 4.634 14.086 hybrid contribution -2.329 -0.967 0.290 2.538 sum -15.621 -0.456 4.924 16.385 Atomic orbital electron populations 1.81271 1.12793 1.08713 1.07830 1.28768 0.94805 0.93333 0.93719 1.19002 0.81462 1.06118 0.99870 1.22434 0.80599 1.01406 0.96738 1.85961 1.19161 1.79460 1.38232 1.18910 0.92171 0.95557 0.85547 1.20966 0.98998 1.09120 0.95909 1.20829 0.94703 0.98095 0.96726 1.20917 0.93121 1.03799 0.99333 1.21371 1.00262 0.90574 0.90816 1.18416 0.82604 0.89694 0.96594 0.94188 1.59463 1.67117 1.03468 1.05547 1.21677 0.94414 1.10271 1.38306 0.93434 1.25631 0.93001 1.01321 0.97190 1.70528 1.37661 1.14164 1.30105 0.83603 0.75692 0.75128 0.76012 1.21619 1.21696 1.21101 1.20385 0.90416 1.05599 1.00393 0.86050 0.85986 0.91307 0.91375 0.86501 0.86653 0.86322 0.88681 0.86002 0.89717 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.98 18.54 42.15 0.78 -4.20 16 2 C 0.21 1.79 15.43 -20.76 -0.32 1.47 16 3 C -0.02 -0.14 6.07 -29.52 -0.18 -0.32 16 4 C 0.07 0.57 4.70 37.15 0.17 0.74 16 5 O -0.31 -4.07 10.14 -19.42 -0.20 -4.27 16 6 C 0.12 1.94 6.69 -39.21 -0.26 1.68 16 7 C -0.23 -3.37 9.04 -39.43 -0.36 -3.73 16 8 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 9 C -0.15 -2.79 9.29 -39.56 -0.37 -3.15 16 10 C -0.03 -0.56 4.88 -104.65 -0.51 -1.07 16 11 C 0.24 5.61 2.47 -70.02 -0.17 5.43 16 12 H 0.04 1.03 7.87 -51.92 -0.41 0.62 16 13 N -0.83 -18.27 7.62 -6.65 -0.05 -18.32 16 14 C -0.61 -16.52 8.70 -34.44 -0.30 -16.82 16 15 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 16 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 17 N -0.89 -26.37 13.50 55.43 0.75 -25.62 16 18 Si 1.07 24.93 29.90 -169.99 -5.08 19.84 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.15 -2.78 9.61 -39.43 -0.38 -3.16 16 23 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.12 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 26 H 0.07 0.55 7.66 -51.92 -0.40 0.15 16 27 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 28 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.12 2.12 6.66 -52.48 -0.35 1.77 16 30 H 0.30 5.87 9.06 -39.29 -0.36 5.51 16 31 H 0.33 6.92 7.34 -39.29 -0.29 6.63 16 32 H 0.29 8.56 6.39 -40.82 -0.26 8.29 16 33 H 0.13 2.34 8.03 -52.49 -0.42 1.92 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -31.87 292.38 -6.24 -38.11 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.68 Total: 9.72 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.17 Total: -19.67 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.48 Total: -48.14 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.87 -6.24 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309562261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.494 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds