Wall clock time and date at job start Mon Mar 30 2020 04:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47064 * 66.09179 * 3 2 1 5 5 O 1.42901 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.35898 * 117.00427 * 179.97438 * 5 4 3 7 7 C 1.38757 * 120.05301 * 359.97438 * 6 5 4 8 8 C 1.38118 * 119.94403 * 180.02562 * 7 6 5 9 9 C 1.38291 * 120.05591 * 0.02808 * 8 7 6 10 10 C 1.38246 * 120.11171 * 359.95422 * 9 8 7 11 11 C 1.50693 * 119.97010 * 180.02562 * 10 9 8 12 12 H 1.09010 * 109.46918 * 199.99805 * 11 10 9 13 13 N 1.46898 * 109.47183 * 319.99567 * 11 10 9 14 14 C 1.50696 * 109.47459 * 80.00040 * 11 10 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.38164 * 120.05445 * 0.27316 * 10 9 8 23 23 H 1.08997 * 109.47429 * 306.08502 * 3 2 1 24 24 H 1.09008 * 109.46636 * 186.08839 * 3 2 1 25 25 H 1.08997 * 109.47551 * 59.99397 * 4 3 2 26 26 H 1.09008 * 109.47116 * 299.99366 * 4 3 2 27 27 H 1.07998 * 120.02832 * 0.02562 * 7 6 5 28 28 H 1.08003 * 119.97484 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.94381 * 179.97438 * 9 8 7 30 30 H 1.00899 * 111.00188 * 296.04594 * 13 11 10 31 31 H 1.00896 * 111.00080 * 60.00784 * 13 11 10 32 32 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.03077 * 179.74457 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5837 -1.3187 5 8 4.5472 -0.5825 -1.3189 6 6 5.1645 -1.0734 -2.4257 7 6 4.4101 -1.5471 -3.4896 8 6 5.0398 -2.0459 -4.6131 9 6 6.4209 -2.0741 -4.6780 10 6 7.1748 -1.6025 -3.6195 11 6 8.6795 -1.6342 -3.6939 12 1 9.0944 -1.5709 -2.6878 13 7 9.1123 -2.8886 -4.3239 14 6 9.1668 -0.4666 -4.5125 15 1 8.4578 0.2287 -4.9369 16 6 10.5179 -0.2865 -4.7206 17 7 11.3814 -1.1335 -4.2042 18 14 11.1219 1.1604 -5.7360 19 1 11.2077 0.7615 -7.1638 20 1 10.1734 2.2944 -5.5950 21 1 12.4646 1.5755 -5.2564 22 6 6.5497 -1.1068 -2.4915 23 1 2.9717 -0.6044 0.8305 24 1 2.9708 1.0228 0.1090 25 1 2.7546 0.0214 -2.1491 26 1 2.7554 -1.6058 -1.4277 27 1 3.3315 -1.5257 -3.4392 28 1 4.4531 -2.4144 -5.4417 29 1 6.9114 -2.4650 -5.5573 30 1 8.8536 -3.6845 -3.7602 31 1 8.7406 -2.9710 -5.2583 32 1 11.0677 -1.8846 -3.6766 33 1 7.1390 -0.7422 -1.6631 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309562261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:54 Heat of formation + Delta-G solvation = -13.900936 kcal Electronic energy + Delta-G solvation = -16616.367976 eV Core-core repulsion = 13834.252223 eV Total energy + Delta-G solvation = -2782.115753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14746 -39.10623 -37.78554 -36.34385 -33.48284 -33.22015 -31.47033 -30.10935 -27.63247 -25.76627 -24.12630 -23.43694 -21.61838 -19.41101 -18.63855 -17.91892 -17.27629 -17.15436 -16.91861 -16.24991 -15.69073 -15.37701 -15.29698 -15.08661 -14.65065 -14.17616 -13.90818 -13.77499 -13.62503 -13.51229 -12.81230 -12.59021 -12.57458 -12.35408 -12.28386 -11.89756 -11.66988 -11.61753 -10.82009 -10.46485 -9.66988 -9.35131 -9.04243 -8.36480 -6.22690 0.47961 0.55045 1.47921 1.58186 1.66382 1.73745 1.83663 2.18798 2.64554 2.90484 3.20994 3.34140 3.81028 3.95518 3.99323 4.08571 4.22158 4.27329 4.33733 4.50412 4.53093 4.75275 4.80017 4.89415 5.04500 5.18816 5.34762 5.52614 5.82334 5.85219 5.97946 6.25034 6.47912 6.49551 6.69916 6.80205 7.06746 7.68389 9.00171 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.004392 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.002755 B = 6374.319800 C = 6659.795612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.243 3.757 3 C -0.014 4.014 4 C 0.055 3.945 5 O -0.319 6.319 6 C 0.132 3.868 7 C -0.220 4.220 8 C -0.077 4.077 9 C -0.169 4.169 10 C -0.053 4.053 11 C 0.239 3.761 12 H 0.007 0.993 13 N -0.834 5.834 14 C -0.615 4.615 15 H 0.036 0.964 16 C -0.011 4.011 17 N -0.920 5.920 18 Si 1.112 2.888 19 H -0.277 1.277 20 H -0.278 1.278 21 H -0.285 1.285 22 C -0.174 4.174 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.115 0.885 30 H 0.318 0.682 31 H 0.332 0.668 32 H 0.279 0.721 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 -0.186 4.587 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.074 4.074 3 C -0.054 4.054 4 C -0.021 4.021 5 O -0.233 6.233 6 C 0.087 3.913 7 C -0.238 4.238 8 C -0.095 4.095 9 C -0.188 4.188 10 C -0.055 4.055 11 C 0.130 3.870 12 H 0.025 0.975 13 N -0.363 5.363 14 C -0.653 4.653 15 H 0.054 0.946 16 C -0.214 4.214 17 N -0.555 5.555 18 Si 0.935 3.065 19 H -0.203 1.203 20 H -0.203 1.203 21 H -0.211 1.211 22 C -0.193 4.193 23 H 0.162 0.838 24 H 0.160 0.840 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.174 0.826 28 H 0.168 0.832 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.464 0.887 4.293 16.073 hybrid contribution -1.802 -1.105 0.489 2.170 sum -17.266 -0.218 4.782 17.917 Atomic orbital electron populations 1.81316 1.14633 1.10835 1.09730 1.29054 0.94927 0.91474 0.91945 1.19077 0.79472 1.07616 0.99194 1.22754 0.78065 1.02709 0.98591 1.85947 1.21676 1.78717 1.36915 1.18813 0.91255 0.94565 0.86649 1.21391 1.00852 1.06968 0.94618 1.21197 0.93554 0.96737 0.97978 1.20948 0.94584 1.04620 0.98607 1.20971 0.98223 0.93499 0.92809 1.18063 0.85373 0.89372 0.94203 0.97499 1.59214 1.67599 1.03513 1.06001 1.21972 0.94308 1.11101 1.37932 0.94597 1.26960 0.93736 1.03035 0.97690 1.70642 1.38022 1.14947 1.31899 0.83006 0.75405 0.72830 0.75241 1.20277 1.20292 1.21062 1.20326 0.92240 1.06922 0.99847 0.83817 0.84037 0.90461 0.90124 0.82647 0.83179 0.86732 0.87039 0.85462 0.90951 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.51 18.54 20.01 0.37 -10.14 16 2 C 0.24 3.42 15.43 89.44 1.38 4.80 16 3 C -0.01 -0.11 6.07 28.79 0.17 0.06 16 4 C 0.06 0.73 4.70 71.98 0.34 1.07 16 5 O -0.32 -7.32 10.14 -92.41 -0.94 -8.26 16 6 C 0.13 3.91 6.69 22.51 0.15 4.06 16 7 C -0.22 -5.57 9.04 22.37 0.20 -5.36 16 8 C -0.08 -2.13 10.04 22.25 0.22 -1.90 16 9 C -0.17 -6.00 9.29 22.28 0.21 -5.80 16 10 C -0.05 -2.17 4.88 -19.88 -0.10 -2.27 16 11 C 0.24 11.84 2.47 43.42 0.11 11.95 16 12 H 0.01 0.39 7.87 -2.38 -0.02 0.37 16 13 N -0.83 -37.94 7.62 -174.96 -1.33 -39.27 16 14 C -0.61 -34.29 8.70 25.60 0.22 -34.06 16 15 H 0.04 2.03 7.74 -2.91 -0.02 2.01 16 16 C -0.01 -0.60 5.39 84.65 0.46 -0.15 16 17 N -0.92 -55.90 13.50 21.45 0.29 -55.61 16 18 Si 1.11 50.55 29.90 68.60 2.05 52.60 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 C -0.17 -6.55 9.61 22.37 0.21 -6.34 16 23 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 26 H 0.08 0.92 7.66 -2.38 -0.02 0.90 16 27 H 0.16 2.74 6.30 -2.91 -0.02 2.72 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 29 H 0.11 4.06 6.66 -2.91 -0.02 4.04 16 30 H 0.32 12.69 9.06 -89.69 -0.81 11.88 16 31 H 0.33 14.36 7.34 -89.70 -0.66 13.70 16 32 H 0.28 17.10 6.39 -92.71 -0.59 16.51 16 33 H 0.11 4.38 8.03 -2.91 -0.02 4.35 16 Total: -1.00 -71.31 292.38 3.88 -67.43 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.14 Total: 27.19 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 3.58 Total: -33.94 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -0.67 Total: -105.02 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.94 Total: -8.26 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.05 Total: 52.60 kcal Total: -71.31 3.88 -67.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309562261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.526 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds