Wall clock time and date at job start Mon Mar 30 2020 04:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47076 * 154.14870 * 3 2 1 5 5 C 1.50704 * 109.47075 * 179.97438 * 4 3 2 6 6 C 1.38282 * 119.94663 * 89.99690 * 5 4 3 7 7 C 1.38123 * 120.06094 * 180.02562 * 6 5 4 8 8 C 1.38752 * 119.93841 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.05386 * 180.02562 * 8 7 6 10 10 C 1.38706 * 119.89239 * 359.97438 * 8 7 6 11 11 C 1.50700 * 120.03130 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47210 * 325.00368 * 11 10 8 13 13 N 1.46899 * 109.47483 * 205.00037 * 11 10 8 14 14 C 1.50702 * 109.46869 * 85.00075 * 11 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.38167 * 119.94634 * 0.25699 * 10 8 7 23 23 H 1.09000 * 109.47800 * 34.14426 * 3 2 1 24 24 H 1.09002 * 109.47202 * 274.14225 * 3 2 1 25 25 H 1.09000 * 109.47361 * 60.00113 * 4 3 2 26 26 H 1.09000 * 109.47164 * 299.99274 * 4 3 2 27 27 H 1.07999 * 119.97237 * 0.02562 * 6 5 4 28 28 H 1.07990 * 120.03119 * 179.97438 * 7 6 5 29 29 H 0.96708 * 114.00091 * 269.97555 * 9 8 7 30 30 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 31 31 H 1.00904 * 110.99882 * 63.95460 * 13 11 10 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 33 33 H 1.07997 * 119.97696 * 179.74707 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2990 -0.6290 5 6 4.6244 1.3000 -0.6284 6 6 5.3155 0.7777 -1.7063 7 6 6.6967 0.7769 -1.7081 8 6 7.3908 1.3013 -0.6271 9 8 8.7498 1.3021 -0.6266 10 6 6.6954 1.8255 0.4525 11 6 7.4461 2.3953 1.6284 12 1 8.3567 1.8188 1.7921 13 7 6.6013 2.3274 2.8283 14 6 7.8048 3.8317 1.3472 15 1 7.5174 4.2867 0.4107 16 6 8.4943 4.5670 2.2879 17 7 8.8439 4.0131 3.4284 18 14 8.9321 6.3498 1.9424 19 1 7.8361 7.2303 2.4206 20 1 10.1904 6.6967 2.6508 21 1 9.1180 6.5397 0.4814 22 6 5.3137 1.8196 0.4515 23 1 2.9718 -0.8497 -0.5768 24 1 2.9714 -0.0734 1.0250 25 1 2.7537 2.1494 -0.0521 26 1 2.7541 1.3732 -1.6540 27 1 4.7747 0.3701 -2.5477 28 1 7.2359 0.3686 -2.5499 29 1 9.1435 0.5076 -0.2407 30 1 5.7503 2.8545 2.7016 31 1 6.4003 1.3700 3.0753 32 1 9.3293 4.5303 4.0901 33 1 4.7718 2.2240 1.2936 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309568957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:22 Heat of formation + Delta-G solvation = 2.816185 kcal Electronic energy + Delta-G solvation = -17019.674078 eV Core-core repulsion = 14238.283233 eV Total energy + Delta-G solvation = -2781.390844 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.59001 -37.25161 -36.28332 -34.84356 -33.18040 -31.67483 -29.37927 -28.81085 -26.07400 -24.35025 -23.14694 -21.13057 -19.68197 -17.83435 -17.66089 -16.42518 -15.85128 -15.30511 -14.81205 -14.75256 -14.39350 -14.03856 -13.85170 -13.25942 -13.02562 -12.95920 -12.69466 -12.28330 -12.15552 -11.63005 -11.54083 -11.37333 -10.98847 -10.91836 -10.74626 -10.60914 -10.06888 -9.66097 -9.29797 -8.42140 -8.29465 -7.83956 -7.13836 -5.85724 -3.98584 1.62904 1.85951 2.63640 2.65344 3.35949 3.42624 3.47179 3.82329 4.08875 4.52894 4.78570 4.83918 5.02581 5.04410 5.30156 5.36365 5.39994 5.44383 5.64107 5.81066 5.89927 6.10746 6.22553 6.35871 6.50907 6.69893 6.92616 6.99900 7.32195 7.42019 7.45908 7.93220 8.18649 8.29288 8.60563 8.96206 9.14491 9.68755 11.18786 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024088 B = 0.005896 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.120044 B = 4747.784218 C = 5326.190223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.211 3.789 3 C -0.023 4.023 4 C -0.069 4.069 5 C -0.101 4.101 6 C -0.125 4.125 7 C -0.149 4.149 8 C 0.106 3.894 9 O -0.485 6.485 10 C -0.094 4.094 11 C 0.260 3.740 12 H 0.050 0.950 13 N -0.811 5.811 14 C -0.519 4.519 15 H 0.051 0.949 16 C 0.083 3.917 17 N -0.850 5.850 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.109 4.109 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.379 0.621 30 H 0.318 0.682 31 H 0.297 0.703 32 H 0.255 0.745 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -9.225 -7.144 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.107 4.107 3 C -0.063 4.063 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.143 4.143 7 C -0.168 4.168 8 C 0.061 3.939 9 O -0.293 6.293 10 C -0.097 4.097 11 C 0.150 3.850 12 H 0.067 0.933 13 N -0.338 5.338 14 C -0.558 4.558 15 H 0.069 0.931 16 C -0.123 4.123 17 N -0.485 5.485 18 Si 0.712 3.288 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.128 4.128 23 H 0.127 0.873 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.234 0.766 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.211 -8.283 -6.824 12.930 hybrid contribution 0.151 0.164 -0.661 0.698 sum -7.060 -8.120 -7.486 13.107 Atomic orbital electron populations 1.81223 1.13199 1.08791 1.09176 1.29366 0.95406 0.93012 0.92897 1.19377 0.80905 1.00930 1.05104 1.20425 0.92310 0.96157 1.01886 1.19521 0.93900 1.01414 0.95338 1.20629 0.93460 1.02065 0.98134 1.21337 0.94512 1.01978 0.98959 1.18402 0.83218 0.98737 0.93538 1.84912 1.15839 1.44826 1.83769 1.22169 0.94362 0.94443 0.98749 1.18072 0.90647 0.96149 0.80114 0.93257 1.59179 1.21414 1.13283 1.39879 1.20705 1.37746 0.95111 1.02192 0.93066 1.24911 0.94969 0.97510 0.94898 1.70095 1.36637 1.35598 1.06140 0.86753 0.77796 0.85942 0.78337 1.20806 1.21305 1.20026 1.20800 0.93702 1.00137 0.98133 0.87250 0.87017 0.90189 0.90492 0.86591 0.86390 0.76614 0.86926 0.89222 0.93534 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.99 18.54 42.16 0.78 -5.21 16 2 C 0.21 2.17 15.43 -20.76 -0.32 1.85 16 3 C -0.02 -0.17 5.68 -29.52 -0.17 -0.34 16 4 C -0.07 -0.65 5.30 -27.88 -0.15 -0.80 16 5 C -0.10 -1.30 5.14 -104.60 -0.54 -1.83 16 6 C -0.12 -1.58 9.69 -39.61 -0.38 -1.96 16 7 C -0.15 -2.20 9.99 -39.43 -0.39 -2.59 16 8 C 0.11 1.91 6.68 -39.22 -0.26 1.64 16 9 O -0.48 -8.82 12.64 -19.43 -0.25 -9.07 16 10 C -0.09 -1.81 5.00 -104.48 -0.52 -2.33 16 11 C 0.26 6.05 2.57 -70.02 -0.18 5.87 16 12 H 0.05 1.27 7.69 -51.93 -0.40 0.87 16 13 N -0.81 -17.62 8.12 -6.65 -0.05 -17.67 16 14 C -0.52 -14.03 8.71 -34.44 -0.30 -14.33 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.08 2.30 5.39 -17.82 -0.10 2.21 16 17 N -0.85 -24.30 12.76 55.43 0.71 -23.59 16 18 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.11 -1.74 8.92 -39.60 -0.35 -2.09 16 23 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.38 5.02 9.06 45.56 0.41 5.43 16 30 H 0.32 6.54 7.21 -39.29 -0.28 6.26 16 31 H 0.30 5.60 9.06 -39.29 -0.36 5.25 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.12 1.84 6.29 -52.49 -0.33 1.51 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -32.54 295.34 -6.07 -38.62 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.03 Total: 10.79 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.66 Total: -14.70 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 1.43 Total: -46.48 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.25 Total: -9.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.54 -6.07 -38.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309568957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.433 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds