Wall clock time and date at job start Mon Mar 30 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48497 * 109.47553 * 270.00534 * 3 2 1 5 5 H 1.48505 * 109.46959 * 30.00286 * 3 2 1 6 6 H 1.48500 * 109.47474 * 149.99911 * 3 2 1 7 7 C 1.39935 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99768 * 196.78559 * 7 2 1 9 9 C 1.41408 * 119.99908 * 16.78676 * 7 2 1 10 10 C 1.40784 * 120.20826 * 205.18377 * 9 7 2 11 11 C 1.37637 * 119.88095 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32756 * 359.74428 * 11 10 9 13 13 C 1.39248 * 120.42488 * 0.51426 * 12 11 10 14 14 N 1.39939 * 119.94860 * 179.76691 * 13 12 11 15 15 C 1.34778 * 119.99587 * 325.53911 * 14 13 12 16 16 O 1.21289 * 119.99992 * 354.89231 * 15 14 13 17 17 C 1.50698 * 119.99904 * 174.89310 * 15 14 13 18 18 H 1.09000 * 112.75042 * 311.26851 * 17 15 14 19 19 C 1.53511 * 113.52882 * 82.09168 * 17 15 14 20 20 C 1.53503 * 83.57997 * 88.74931 * 19 17 15 21 21 N 1.47480 * 87.93302 * 26.02390 * 20 19 17 22 22 C 1.38287 * 120.10447 * 359.48716 * 13 12 11 23 23 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.05396 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.83206 * 179.97438 * 11 10 9 26 26 H 1.07998 * 119.78854 * 180.25375 * 12 11 10 27 27 H 0.96990 * 120.00424 * 145.54161 * 14 13 12 28 28 H 1.09007 * 114.16965 * 202.40079 * 19 17 15 29 29 H 1.09004 * 114.17334 * 334.91002 * 19 17 15 30 30 H 1.09001 * 113.47773 * 271.26005 * 20 19 17 31 31 H 1.09001 * 113.47891 * 140.78879 * 20 19 17 32 32 H 1.00898 * 111.00281 * 221.30083 * 21 20 19 33 33 H 1.08003 * 120.16041 * 180.28227 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2696 9 6 1.3462 -2.4102 -0.3548 10 6 1.8184 -3.6478 0.1221 11 6 1.1687 -4.8101 -0.2264 12 6 0.0486 -4.7682 -1.0404 13 6 -0.4267 -3.5519 -1.5239 14 7 -1.5562 -3.5216 -2.3495 15 6 -1.7815 -4.5254 -3.2203 16 8 -0.9598 -5.4073 -3.3549 17 6 -3.0543 -4.5519 -4.0266 18 1 -3.9434 -4.3940 -3.4162 19 6 -3.0058 -3.6637 -5.2777 20 6 -2.4412 -4.9271 -5.9422 21 7 -3.1572 -5.7180 -4.9238 22 6 0.2123 -2.3733 -1.1849 23 1 -0.4851 0.8400 0.0004 24 1 2.6888 -3.6850 0.7604 25 1 1.5319 -5.7591 0.1395 26 1 -0.4569 -5.6851 -1.3052 27 1 -2.1769 -2.7784 -2.2951 28 1 -3.9853 -3.3633 -5.6500 29 1 -2.2986 -2.8369 -5.2110 30 1 -1.3565 -5.0076 -5.8708 31 1 -2.8107 -5.0872 -6.9551 32 1 -2.5868 -6.4811 -4.5917 33 1 -0.1582 -1.4291 -1.5557 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313412941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:37 Heat of formation + Delta-G solvation = 16.196003 kcal Electronic energy + Delta-G solvation = -17258.469039 eV Core-core repulsion = 14477.658387 eV Total energy + Delta-G solvation = -2780.810652 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79897 -38.40776 -36.82433 -34.35610 -33.34516 -29.62874 -28.96730 -27.62469 -26.35726 -25.28304 -22.28550 -21.26239 -20.21971 -19.15518 -17.60401 -17.49409 -16.25094 -15.83622 -15.31520 -14.86710 -14.72107 -14.13286 -13.81106 -13.11124 -13.03764 -12.74242 -12.39839 -12.03072 -11.69075 -11.34340 -11.32355 -11.17878 -10.83170 -10.73551 -10.66554 -10.16551 -9.79645 -9.75810 -9.39905 -9.15522 -8.82204 -7.43492 -7.08213 -6.74701 -4.41904 2.41809 2.79879 3.04422 3.07950 3.11582 3.24617 3.51941 3.89908 4.13652 4.36493 4.60022 4.85682 5.01091 5.30225 5.42421 5.62216 5.65704 5.68298 5.82619 5.96939 6.22515 6.57119 6.62584 6.82226 6.99249 7.01193 7.09145 7.20327 7.54477 7.61756 7.86938 7.97618 8.06875 8.26347 8.47405 8.65538 8.84090 8.90249 10.14604 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.005941 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.101627 B = 4711.958155 C = 5417.939243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.227 4.227 11 C -0.086 4.086 12 C -0.227 4.227 13 C 0.142 3.858 14 N -0.655 5.655 15 C 0.499 3.501 16 O -0.528 6.528 17 C 0.006 3.994 18 H 0.117 0.883 19 C -0.131 4.131 20 C -0.002 4.002 21 N -0.606 5.606 22 C -0.180 4.180 23 H 0.279 0.721 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.404 0.596 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.334 0.666 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 -1.544 -6.824 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.246 4.246 11 C -0.105 4.105 12 C -0.248 4.248 13 C 0.050 3.950 14 N -0.298 5.298 15 C 0.284 3.716 16 O -0.404 6.404 17 C -0.110 4.110 18 H 0.134 0.866 19 C -0.169 4.169 20 C -0.132 4.132 21 N -0.233 5.233 22 C -0.202 4.202 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.239 0.761 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.483 -2.151 -7.167 9.901 hybrid contribution 0.946 1.212 0.462 1.606 sum -5.537 -0.939 -6.705 8.746 Atomic orbital electron populations 1.69806 1.07544 1.29065 1.36091 1.25879 0.94751 1.01246 0.92150 0.86308 0.80535 0.80566 0.79284 1.19338 1.20339 1.18605 1.19556 0.97835 0.90978 1.40930 0.90299 1.17374 0.90574 0.92194 0.88176 1.21058 1.03832 0.92884 1.06866 1.20421 0.95584 0.96665 0.97799 1.20277 1.02126 0.95474 1.06950 1.17629 0.88438 0.95137 0.93787 1.43429 1.25572 1.23656 1.37128 1.20814 0.88041 0.82536 0.80240 1.90707 1.45977 1.37440 1.66324 1.23090 0.96623 0.95075 0.96163 0.86552 1.23139 1.02886 0.96783 0.94109 1.23572 0.98545 0.93061 0.98048 1.67532 1.45268 1.04582 1.05923 1.21076 0.99910 0.95307 1.03902 0.90987 0.88779 0.88985 0.88224 0.76090 0.88013 0.90134 0.90849 0.89646 0.85018 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.79 10.94 55.55 0.61 -19.18 16 2 C 0.08 1.87 5.16 -17.35 -0.09 1.78 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.08 9.06 -37.74 -0.34 -12.42 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.16 5.57 -106.85 -0.60 2.57 16 10 C -0.23 -5.61 9.79 -38.84 -0.38 -5.99 16 11 C -0.09 -2.01 10.02 -39.69 -0.40 -2.41 16 12 C -0.23 -5.40 8.66 -39.10 -0.34 -5.74 16 13 C 0.14 3.29 6.25 -83.76 -0.52 2.77 16 14 N -0.65 -12.12 5.33 -9.91 -0.05 -12.17 16 15 C 0.50 8.71 6.71 -10.99 -0.07 8.63 16 16 O -0.53 -11.02 13.12 5.55 0.07 -10.94 16 17 C 0.01 0.07 4.84 -72.58 -0.35 -0.28 16 18 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 19 C -0.13 -1.44 8.05 -26.21 -0.21 -1.65 16 20 C 0.00 -0.02 8.18 -7.55 -0.06 -0.08 16 21 N -0.61 -8.05 8.64 -116.70 -1.01 -9.06 16 22 C -0.18 -4.54 8.60 -38.68 -0.33 -4.88 16 23 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 24 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 25 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.10 2.34 6.47 -52.49 -0.34 2.00 16 27 H 0.40 6.30 8.82 -40.82 -0.36 5.94 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.07 1.01 7.65 -51.93 -0.40 0.61 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.33 4.82 7.72 -39.29 -0.30 4.51 16 33 H 0.12 3.11 6.17 -52.48 -0.32 2.79 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -28.85 281.49 -8.67 -37.52 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -3.81 Total: 14.08 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.70 Total: -17.70 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.45 Total: -40.42 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.85 -8.67 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.717 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds