Wall clock time and date at job start Mon Mar 30 2020 04:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48497 * 109.47553 * 270.00534 * 3 2 1 5 5 H 1.48505 * 109.46959 * 30.00286 * 3 2 1 6 6 H 1.48500 * 109.47474 * 149.99911 * 3 2 1 7 7 C 1.39935 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99768 * 196.78559 * 7 2 1 9 9 C 1.41408 * 119.99908 * 16.78676 * 7 2 1 10 10 C 1.40784 * 120.20826 * 205.18377 * 9 7 2 11 11 C 1.37637 * 119.88095 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32756 * 359.74428 * 11 10 9 13 13 C 1.39248 * 120.42488 * 0.51426 * 12 11 10 14 14 N 1.39939 * 119.94860 * 179.76691 * 13 12 11 15 15 C 1.34778 * 119.99587 * 325.53911 * 14 13 12 16 16 O 1.21289 * 119.99992 * 354.89231 * 15 14 13 17 17 C 1.50698 * 119.99904 * 174.89310 * 15 14 13 18 18 H 1.09000 * 112.75042 * 311.26851 * 17 15 14 19 19 C 1.53511 * 113.52882 * 82.09168 * 17 15 14 20 20 C 1.53503 * 83.57997 * 88.74931 * 19 17 15 21 21 N 1.47480 * 87.93302 * 26.02390 * 20 19 17 22 22 C 1.38287 * 120.10447 * 359.48716 * 13 12 11 23 23 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.05396 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.83206 * 179.97438 * 11 10 9 26 26 H 1.07998 * 119.78854 * 180.25375 * 12 11 10 27 27 H 0.96990 * 120.00424 * 145.54161 * 14 13 12 28 28 H 1.09007 * 114.16965 * 202.40079 * 19 17 15 29 29 H 1.09004 * 114.17334 * 334.91002 * 19 17 15 30 30 H 1.09001 * 113.47773 * 271.26005 * 20 19 17 31 31 H 1.09001 * 113.47891 * 140.78879 * 20 19 17 32 32 H 1.00898 * 111.00281 * 221.30083 * 21 20 19 33 33 H 1.08003 * 120.16041 * 180.28227 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2696 9 6 1.3462 -2.4102 -0.3548 10 6 1.8184 -3.6478 0.1221 11 6 1.1687 -4.8101 -0.2264 12 6 0.0486 -4.7682 -1.0404 13 6 -0.4267 -3.5519 -1.5239 14 7 -1.5562 -3.5216 -2.3495 15 6 -1.7815 -4.5254 -3.2203 16 8 -0.9598 -5.4073 -3.3549 17 6 -3.0543 -4.5519 -4.0266 18 1 -3.9434 -4.3940 -3.4162 19 6 -3.0058 -3.6637 -5.2777 20 6 -2.4412 -4.9271 -5.9422 21 7 -3.1572 -5.7180 -4.9238 22 6 0.2123 -2.3733 -1.1849 23 1 -0.4851 0.8400 0.0004 24 1 2.6888 -3.6850 0.7604 25 1 1.5319 -5.7591 0.1395 26 1 -0.4569 -5.6851 -1.3052 27 1 -2.1769 -2.7784 -2.2951 28 1 -3.9853 -3.3633 -5.6500 29 1 -2.2986 -2.8369 -5.2110 30 1 -1.3565 -5.0076 -5.8708 31 1 -2.8107 -5.0872 -6.9551 32 1 -2.5868 -6.4811 -4.5917 33 1 -0.1582 -1.4291 -1.5557 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313412941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:36 Heat of formation + Delta-G solvation = -4.128037 kcal Electronic energy + Delta-G solvation = -17259.350356 eV Core-core repulsion = 14477.658387 eV Total energy + Delta-G solvation = -2781.691968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.07476 -39.91671 -38.41457 -36.04582 -35.13995 -31.51692 -30.64701 -28.62107 -27.61240 -27.15727 -23.67936 -23.10055 -21.83170 -20.47319 -19.29193 -18.81300 -17.60581 -17.40223 -16.69377 -16.53078 -16.43244 -15.63646 -15.09597 -14.80012 -14.54433 -14.19173 -14.14368 -13.50897 -13.12075 -12.92536 -12.84776 -12.61982 -12.38086 -12.26933 -11.86962 -11.72062 -11.60354 -11.30500 -11.11936 -10.86914 -10.10235 -9.36342 -8.89944 -8.57437 -6.37514 0.73998 1.01191 1.40759 1.47115 1.52892 1.64078 2.10378 2.22186 2.72978 3.10660 3.38229 3.62430 3.70821 3.99900 4.32414 4.42729 4.46278 4.67682 4.72212 4.79486 4.83438 4.85388 5.07199 5.08971 5.12639 5.19009 5.33783 5.74109 5.80989 5.97371 5.99673 6.06129 6.29400 6.51243 6.69368 6.91908 6.94214 7.16006 8.33090 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.005941 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.101627 B = 4711.958155 C = 5417.939243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.040 3.960 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.092 3.908 10 C -0.248 4.248 11 C -0.085 4.085 12 C -0.242 4.242 13 C 0.148 3.852 14 N -0.651 5.651 15 C 0.499 3.501 16 O -0.564 6.564 17 C 0.009 3.991 18 H 0.142 0.858 19 C -0.116 4.116 20 C -0.007 4.007 21 N -0.605 5.605 22 C -0.201 4.201 23 H 0.290 0.710 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.419 0.581 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.326 0.674 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 -0.560 -7.667 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.094 0.906 9 C 0.089 3.911 10 C -0.268 4.268 11 C -0.103 4.103 12 C -0.263 4.263 13 C 0.055 3.945 14 N -0.296 5.296 15 C 0.286 3.714 16 O -0.443 6.443 17 C -0.106 4.106 18 H 0.159 0.841 19 C -0.153 4.153 20 C -0.137 4.137 21 N -0.231 5.231 22 C -0.222 4.222 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.256 0.744 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.683 -1.171 -8.024 11.171 hybrid contribution 1.256 0.829 0.697 1.659 sum -6.427 -0.342 -7.326 9.752 Atomic orbital electron populations 1.69832 1.08753 1.30621 1.35408 1.26685 0.95584 1.04207 0.91112 0.85207 0.79066 0.76004 0.79457 1.18767 1.19046 1.18536 1.19804 0.98038 0.92190 1.42713 0.90616 1.17783 0.91441 0.93093 0.88798 1.21229 1.04679 0.93069 1.07827 1.20729 0.95126 0.97447 0.97046 1.20457 1.02638 0.95757 1.07464 1.17689 0.89172 0.94314 0.93330 1.43404 1.24574 1.24768 1.36808 1.21660 0.88991 0.81141 0.79596 1.90687 1.47660 1.38647 1.67293 1.23140 0.94616 0.96090 0.96720 0.84060 1.23214 1.04347 0.95893 0.91887 1.23631 0.97311 0.93625 0.99118 1.67586 1.44995 1.04350 1.06135 1.21032 1.00561 0.95674 1.04955 0.89943 0.88050 0.86323 0.88065 0.74407 0.84937 0.90269 0.93131 0.87436 0.85928 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.59 10.94 21.82 0.24 -40.35 16 2 C 0.04 1.92 5.16 85.25 0.44 2.36 16 3 Si 0.98 36.94 29.59 68.60 2.03 38.97 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.50 -26.52 9.06 23.46 0.21 -26.31 16 8 H 0.08 3.92 7.90 -2.91 -0.02 3.90 16 9 C 0.09 4.97 5.57 -21.31 -0.12 4.85 16 10 C -0.25 -12.55 9.79 22.75 0.22 -12.33 16 11 C -0.08 -3.99 10.02 22.20 0.22 -3.77 16 12 C -0.24 -11.58 8.66 22.58 0.20 -11.39 16 13 C 0.15 6.93 6.25 38.10 0.24 7.17 16 14 N -0.65 -23.75 5.33 -303.64 -1.62 -25.37 16 15 C 0.50 17.00 6.71 87.66 0.59 17.59 16 16 O -0.56 -23.58 13.12 -3.06 -0.04 -23.62 16 17 C 0.01 0.22 4.84 41.44 0.20 0.42 16 18 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 19 C -0.12 -2.19 8.05 30.93 0.25 -1.94 16 20 C -0.01 -0.14 8.18 83.57 0.68 0.54 16 21 N -0.61 -14.88 8.64 -523.13 -4.52 -19.40 16 22 C -0.20 -10.30 8.60 22.85 0.20 -10.11 16 23 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 24 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 25 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 26 H 0.10 4.77 6.47 -2.91 -0.02 4.75 16 27 H 0.42 12.62 8.82 -92.72 -0.82 11.80 16 28 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 30 H 0.05 1.36 7.65 -2.39 -0.02 1.34 16 31 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.33 9.11 7.72 -89.70 -0.69 8.42 16 33 H 0.12 5.99 6.17 -2.91 -0.02 5.97 16 Total: -1.00 -62.70 281.49 -0.94 -63.64 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.36 Total: 39.04 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 3.33 Total: -32.91 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -5.90 Total: -85.12 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -62.70 -0.94 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.512 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds