Wall clock time and date at job start Mon Mar 30 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48494 * 109.46861 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47204 * 30.00092 * 3 2 1 6 6 H 1.48499 * 109.47067 * 150.00218 * 3 2 1 7 7 C 1.39930 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00151 * 187.56028 * 7 2 1 9 9 C 1.41417 * 119.99693 * 7.55409 * 7 2 1 10 10 C 1.40785 * 120.20773 * 31.58586 * 9 7 2 11 11 C 1.37639 * 119.88913 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32307 * 359.74460 * 11 10 9 13 13 C 1.39265 * 120.42729 * 0.51289 * 12 11 10 14 14 N 1.39849 * 119.95259 * 179.76577 * 13 12 11 15 15 C 1.34775 * 119.99843 * 326.60880 * 14 13 12 16 16 O 1.21632 * 119.99602 * 353.71206 * 15 14 13 17 17 C 1.47064 * 120.00244 * 173.71479 * 15 14 13 18 18 C 1.33016 * 120.00095 * 200.01435 * 17 15 14 19 19 C 1.50705 * 119.99979 * 8.46517 * 18 17 15 20 20 N 1.46902 * 109.47218 * 133.27336 * 19 18 17 21 21 C 1.38304 * 120.10139 * 359.48509 * 13 12 11 22 22 H 0.97003 * 120.00266 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.05334 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.84107 * 180.02562 * 11 10 9 25 25 H 1.08001 * 119.78649 * 180.28151 * 12 11 10 26 26 H 0.97002 * 120.00307 * 146.60331 * 14 13 12 27 27 H 1.07999 * 119.99531 * 20.01958 * 17 15 14 28 28 H 1.07996 * 119.99956 * 188.18192 * 18 17 15 29 29 H 1.08995 * 109.46809 * 253.27528 * 19 18 17 30 30 H 1.09004 * 109.47127 * 13.27512 * 19 18 17 31 31 H 1.00900 * 110.99592 * 179.97438 * 20 19 18 32 32 H 1.00903 * 110.99717 * 303.95145 * 20 19 18 33 33 H 1.07999 * 120.16494 * 180.23010 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0809 -1.2159 0.1225 9 6 1.3101 -2.4311 -0.1621 10 6 0.1394 -2.4791 -0.9426 11 6 -0.5350 -3.6693 -1.0950 12 6 -0.0647 -4.8224 -0.4882 13 6 1.0890 -4.7890 0.2911 14 7 1.5523 -5.9580 0.9031 15 6 0.6752 -6.8863 1.3336 16 8 -0.5190 -6.6588 1.2947 17 6 1.1620 -8.1742 1.8504 18 6 0.3447 -9.2225 1.9005 19 6 -1.0155 -9.1490 1.2558 20 7 -1.2459 -10.3614 0.4590 21 6 1.7806 -3.6027 0.4560 22 1 -0.4851 0.8400 0.0004 23 1 -0.2293 -1.5835 -1.4203 24 1 -1.4328 -3.7053 -1.6943 25 1 -0.5982 -5.7525 -0.6173 26 1 2.5049 -6.1008 1.0177 27 1 2.1830 -8.2688 2.1894 28 1 0.6577 -10.1279 2.3992 29 1 -1.7801 -9.0714 2.0287 30 1 -1.0637 -8.2737 0.6079 31 1 -2.1523 -10.3363 0.0164 32 1 -0.5136 -10.4903 -0.2231 33 1 2.6774 -3.5764 1.0571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313419447.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:31 Heat of formation + Delta-G solvation = 5.735745 kcal Electronic energy + Delta-G solvation = -16810.049160 eV Core-core repulsion = 14028.784918 eV Total energy + Delta-G solvation = -2781.264242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90610 -37.44162 -35.50947 -34.30798 -33.08687 -31.88464 -29.83539 -28.37009 -25.31154 -25.08090 -22.54976 -21.08349 -20.37933 -19.12067 -17.58794 -16.88654 -15.81951 -15.72865 -15.35918 -14.88428 -14.60862 -14.17343 -13.70327 -13.30719 -13.14152 -12.83408 -12.53623 -12.23687 -11.71835 -11.66577 -11.19115 -11.16496 -10.95463 -10.48090 -10.19989 -9.63348 -9.49166 -9.46781 -9.30501 -8.94356 -8.53619 -7.44258 -6.91959 -6.64799 -4.39519 1.39488 2.77222 2.81904 3.08732 3.11635 3.19995 3.60225 3.68246 3.96608 4.52809 4.69277 4.91372 5.01932 5.39439 5.64200 5.67896 5.84110 6.20662 6.23301 6.38239 6.51259 6.73753 6.89770 6.97799 7.02602 7.04993 7.26180 7.30792 7.58526 7.64745 7.94998 8.03487 8.11529 8.30285 8.57496 8.68513 8.90512 8.95268 10.28039 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.053762 B = 0.004503 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.688270 B = 6216.413704 C = 6536.836716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.122 3.878 10 C -0.157 4.157 11 C -0.099 4.099 12 C -0.220 4.220 13 C 0.148 3.852 14 N -0.662 5.662 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.212 4.212 18 C -0.066 4.066 19 C 0.058 3.942 20 N -0.855 5.855 21 C -0.237 4.237 22 H 0.279 0.721 23 H 0.121 0.879 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.401 0.599 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.344 0.656 32 H 0.338 0.662 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -11.665 0.733 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.499 4.499 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.177 4.177 11 C -0.118 4.118 12 C -0.241 4.241 13 C 0.056 3.944 14 N -0.305 5.305 15 C 0.321 3.679 16 O -0.398 6.398 17 C -0.234 4.234 18 C -0.086 4.086 19 C -0.071 4.071 20 N -0.384 5.384 21 C -0.259 4.259 22 H 0.090 0.910 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.235 0.765 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.502 -11.742 1.419 11.922 hybrid contribution 0.865 1.345 -0.485 1.672 sum 2.367 -10.396 0.934 10.703 Atomic orbital electron populations 1.69789 1.07344 1.28915 1.37212 1.25855 0.94850 1.01091 0.92467 0.86250 0.80234 0.80656 0.79132 1.19423 1.20353 1.18775 1.19492 0.95129 0.90156 1.45121 0.90586 1.17401 0.91455 0.91390 0.87860 1.21428 0.98372 0.96430 1.01450 1.20609 0.98405 0.93234 0.99589 1.20304 0.99834 0.98179 1.05796 1.17449 0.96799 0.84503 0.95632 1.43432 1.09578 1.18984 1.58467 1.18676 0.86403 0.84672 0.78135 1.90739 1.15644 1.78822 1.54564 1.22743 1.00750 0.93625 1.06237 1.23596 0.94645 0.97418 0.92914 1.21474 0.94887 0.92357 0.98341 1.58687 1.07614 1.40817 1.31312 1.20811 1.04443 0.92182 1.08464 0.91024 0.86162 0.89000 0.88295 0.76499 0.85224 0.85456 0.89605 0.90353 0.84355 0.85059 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.22 10.87 55.55 0.60 -20.61 16 2 C 0.07 1.86 5.29 -17.34 -0.09 1.76 16 3 Si 0.91 18.83 29.57 -169.99 -5.03 13.80 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.47 -12.40 9.05 -37.74 -0.34 -12.74 16 8 H 0.08 1.92 7.86 -52.49 -0.41 1.50 16 9 C 0.12 3.25 5.53 -106.84 -0.59 2.66 16 10 C -0.16 -4.13 8.64 -38.84 -0.34 -4.47 16 11 C -0.10 -2.41 10.02 -39.69 -0.40 -2.81 16 12 C -0.22 -5.21 8.66 -39.09 -0.34 -5.55 16 13 C 0.15 3.34 6.26 -83.79 -0.52 2.82 16 14 N -0.66 -11.77 5.33 -10.99 -0.06 -11.83 16 15 C 0.53 9.17 7.06 -12.68 -0.09 9.08 16 16 O -0.52 -10.77 11.35 5.25 0.06 -10.71 16 17 C -0.21 -2.63 10.02 -37.82 -0.38 -3.00 16 18 C -0.07 -0.76 9.84 -36.12 -0.36 -1.11 16 19 C 0.06 0.75 6.30 -4.97 -0.03 0.72 16 20 N -0.85 -9.04 9.61 -11.40 -0.11 -9.15 16 21 C -0.24 -5.75 9.70 -38.68 -0.38 -6.12 16 22 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 23 H 0.12 3.25 6.32 -52.49 -0.33 2.92 16 24 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 25 H 0.10 2.28 6.43 -52.49 -0.34 1.94 16 26 H 0.40 5.62 8.80 -40.82 -0.36 5.26 16 27 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.24 5.11 -51.93 -0.27 0.98 16 31 H 0.34 3.22 9.08 -39.29 -0.36 2.86 16 32 H 0.34 3.21 8.99 -39.29 -0.35 2.86 16 33 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -30.22 285.66 -7.74 -37.97 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -3.66 Total: 14.98 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.85 Total: -18.76 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.44 Total: -41.59 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.06 Total: -10.71 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.22 -7.74 -37.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419447.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.701 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds