Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48494 * 109.46861 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47204 * 30.00092 * 3 2 1 6 6 H 1.48499 * 109.47067 * 150.00218 * 3 2 1 7 7 C 1.39930 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00151 * 187.56028 * 7 2 1 9 9 C 1.41417 * 119.99693 * 7.55409 * 7 2 1 10 10 C 1.40785 * 120.20773 * 31.58586 * 9 7 2 11 11 C 1.37639 * 119.88913 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32307 * 359.74460 * 11 10 9 13 13 C 1.39265 * 120.42729 * 0.51289 * 12 11 10 14 14 N 1.39849 * 119.95259 * 179.76577 * 13 12 11 15 15 C 1.34775 * 119.99843 * 326.60880 * 14 13 12 16 16 O 1.21632 * 119.99602 * 353.71206 * 15 14 13 17 17 C 1.47064 * 120.00244 * 173.71479 * 15 14 13 18 18 C 1.33016 * 120.00095 * 200.01435 * 17 15 14 19 19 C 1.50705 * 119.99979 * 8.46517 * 18 17 15 20 20 N 1.46902 * 109.47218 * 133.27336 * 19 18 17 21 21 C 1.38304 * 120.10139 * 359.48509 * 13 12 11 22 22 H 0.97003 * 120.00266 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.05334 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.84107 * 180.02562 * 11 10 9 25 25 H 1.08001 * 119.78649 * 180.28151 * 12 11 10 26 26 H 0.97002 * 120.00307 * 146.60331 * 14 13 12 27 27 H 1.07999 * 119.99531 * 20.01958 * 17 15 14 28 28 H 1.07996 * 119.99956 * 188.18192 * 18 17 15 29 29 H 1.08995 * 109.46809 * 253.27528 * 19 18 17 30 30 H 1.09004 * 109.47127 * 13.27512 * 19 18 17 31 31 H 1.00900 * 110.99592 * 179.97438 * 20 19 18 32 32 H 1.00903 * 110.99717 * 303.95145 * 20 19 18 33 33 H 1.07999 * 120.16494 * 180.23010 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0809 -1.2159 0.1225 9 6 1.3101 -2.4311 -0.1621 10 6 0.1394 -2.4791 -0.9426 11 6 -0.5350 -3.6693 -1.0950 12 6 -0.0647 -4.8224 -0.4882 13 6 1.0890 -4.7890 0.2911 14 7 1.5523 -5.9580 0.9031 15 6 0.6752 -6.8863 1.3336 16 8 -0.5190 -6.6588 1.2947 17 6 1.1620 -8.1742 1.8504 18 6 0.3447 -9.2225 1.9005 19 6 -1.0155 -9.1490 1.2558 20 7 -1.2459 -10.3614 0.4590 21 6 1.7806 -3.6027 0.4560 22 1 -0.4851 0.8400 0.0004 23 1 -0.2293 -1.5835 -1.4203 24 1 -1.4328 -3.7053 -1.6943 25 1 -0.5982 -5.7525 -0.6173 26 1 2.5049 -6.1008 1.0177 27 1 2.1830 -8.2688 2.1894 28 1 0.6577 -10.1279 2.3992 29 1 -1.7801 -9.0714 2.0287 30 1 -1.0637 -8.2737 0.6079 31 1 -2.1523 -10.3363 0.0164 32 1 -0.5136 -10.4903 -0.2231 33 1 2.6774 -3.5764 1.0571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419447.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = -15.503091 kcal Electronic energy + Delta-G solvation = -16810.970145 eV Core-core repulsion = 14028.784918 eV Total energy + Delta-G solvation = -2782.185228 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.36433 -39.18478 -36.71997 -35.86489 -34.86730 -32.90775 -31.77338 -30.09469 -27.20880 -26.25095 -23.90044 -22.91965 -22.04009 -20.46255 -19.38251 -18.02562 -17.50075 -17.00110 -16.90251 -16.41020 -16.19605 -15.50216 -15.16577 -14.86526 -14.51826 -14.25874 -14.06644 -13.65235 -13.55263 -12.93790 -12.91741 -12.79281 -12.64630 -12.23795 -11.93780 -11.42587 -11.19562 -10.98453 -10.65115 -10.45689 -9.56162 -9.37803 -8.74764 -8.53182 -6.40008 0.30251 0.94786 1.02858 1.40108 1.51429 1.54484 2.19971 2.24096 2.33603 2.79655 3.61817 3.68178 3.88277 4.02153 4.39837 4.49279 4.60318 4.68311 4.84261 4.98205 5.01765 5.11625 5.20499 5.25509 5.32643 5.48520 5.74976 5.81464 6.07585 6.08532 6.12133 6.29233 6.51340 6.63103 6.71291 6.93546 6.97088 7.29255 8.40483 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.053762 B = 0.004503 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.688270 B = 6216.413704 C = 6536.836716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.030 3.970 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.500 4.500 8 H 0.080 0.920 9 C 0.094 3.906 10 C -0.185 4.185 11 C -0.102 4.102 12 C -0.231 4.231 13 C 0.159 3.841 14 N -0.656 5.656 15 C 0.525 3.475 16 O -0.559 6.559 17 C -0.214 4.214 18 C -0.049 4.049 19 C 0.057 3.943 20 N -0.848 5.848 21 C -0.248 4.248 22 H 0.285 0.715 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.420 0.580 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.350 0.650 32 H 0.346 0.654 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -12.993 1.583 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.099 0.901 9 C 0.091 3.909 10 C -0.205 4.205 11 C -0.121 4.121 12 C -0.252 4.252 13 C 0.065 3.935 14 N -0.301 5.301 15 C 0.318 3.682 16 O -0.440 6.440 17 C -0.235 4.235 18 C -0.068 4.068 19 C -0.072 4.072 20 N -0.378 5.378 21 C -0.270 4.270 22 H 0.096 0.904 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.121 0.879 26 H 0.258 0.742 27 H 0.188 0.812 28 H 0.180 0.820 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.972 -13.118 2.271 13.641 hybrid contribution 0.322 1.590 -0.746 1.786 sum 3.294 -11.528 1.524 12.086 Atomic orbital electron populations 1.69877 1.08976 1.30231 1.37647 1.26787 0.95621 1.04576 0.91343 0.85104 0.78854 0.75660 0.79441 1.18633 1.19662 1.18007 1.19804 0.95546 0.91091 1.46572 0.90138 1.17784 0.92001 0.92668 0.88430 1.21350 0.99523 0.96550 1.03047 1.20834 0.98782 0.92948 0.99522 1.20466 1.00515 0.98035 1.06148 1.17485 0.95771 0.85816 0.94417 1.43393 1.10967 1.17613 1.58127 1.19569 0.85739 0.85841 0.77078 1.90738 1.17509 1.79727 1.56018 1.22762 1.02841 0.90886 1.07026 1.23862 0.93203 0.98345 0.91430 1.21340 0.95942 0.91972 0.97983 1.58695 1.08385 1.39118 1.31633 1.20984 1.05223 0.92121 1.08674 0.90424 0.87838 0.87281 0.87854 0.74185 0.81189 0.81960 0.90386 0.93586 0.83690 0.84174 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.32 10.87 21.82 0.24 -45.08 16 2 C 0.03 1.51 5.29 85.25 0.45 1.96 16 3 Si 0.99 38.59 29.57 68.60 2.03 40.62 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.50 -26.98 9.05 23.46 0.21 -26.77 16 8 H 0.08 4.11 7.86 -2.91 -0.02 4.08 16 9 C 0.09 5.14 5.53 -21.30 -0.12 5.03 16 10 C -0.18 -10.10 8.64 22.75 0.20 -9.90 16 11 C -0.10 -5.09 10.02 22.20 0.22 -4.87 16 12 C -0.23 -11.04 8.66 22.59 0.20 -10.85 16 13 C 0.16 7.15 6.26 38.12 0.24 7.39 16 14 N -0.66 -22.40 5.33 -306.92 -1.64 -24.04 16 15 C 0.53 17.37 7.06 86.56 0.61 17.98 16 16 O -0.56 -23.12 11.35 -4.13 -0.05 -23.17 16 17 C -0.21 -4.59 10.02 23.42 0.23 -4.36 16 18 C -0.05 -0.96 9.84 24.52 0.24 -0.72 16 19 C 0.06 1.39 6.30 85.56 0.54 1.93 16 20 N -0.85 -16.26 9.61 -189.99 -1.83 -18.09 16 21 C -0.25 -12.11 9.70 22.86 0.22 -11.89 16 22 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 23 H 0.10 5.90 6.32 -2.91 -0.02 5.88 16 24 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 25 H 0.10 4.82 6.43 -2.91 -0.02 4.80 16 26 H 0.42 10.82 8.80 -92.71 -0.82 10.00 16 27 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.45 5.11 -2.38 -0.01 1.44 16 31 H 0.35 6.07 9.08 -89.69 -0.81 5.26 16 32 H 0.35 5.79 8.99 -89.69 -0.81 4.98 16 33 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -67.26 285.66 0.73 -66.53 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -1.27 Total: 38.29 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 3.25 Total: -35.06 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -3.22 Total: -87.21 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -67.26 0.73 -66.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419447.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.023 kcal (2) G-P(sol) polarization free energy of solvation -67.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds