Wall clock time and date at job start Mon Mar 30 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86809 * 120.00072 * 2 1 4 4 H 1.48501 * 109.46462 * 270.72654 * 3 2 1 5 5 H 1.48496 * 109.46953 * 30.72263 * 3 2 1 6 6 H 1.48496 * 109.47421 * 150.72577 * 3 2 1 7 7 C 1.39931 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 341.30914 * 7 2 1 9 9 C 1.41409 * 120.00264 * 161.31250 * 7 2 1 10 10 C 1.40780 * 120.20712 * 331.28862 * 9 7 2 11 11 C 1.37646 * 119.88348 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32190 * 359.73299 * 11 10 9 13 13 C 1.39254 * 120.42924 * 0.54635 * 12 11 10 14 14 N 1.39947 * 119.94888 * 179.72340 * 13 12 11 15 15 C 1.46380 * 119.33013 * 67.35013 * 14 13 12 16 16 C 1.53241 * 109.15261 * 150.96230 * 15 14 13 17 17 C 1.53242 * 108.56316 * 55.48261 * 16 15 14 18 18 N 1.46383 * 109.15182 * 304.51892 * 17 16 15 19 19 C 1.34135 * 121.33851 * 29.06210 * 18 17 16 20 20 O 1.21591 * 118.69300 * 179.14565 * 19 18 17 21 21 C 1.38275 * 120.10137 * 359.45286 * 13 12 11 22 22 H 0.97005 * 120.00379 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.05953 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.83366 * 180.02562 * 11 10 9 25 25 H 1.07999 * 119.78833 * 180.29522 * 12 11 10 26 26 H 1.08997 * 109.52062 * 31.05896 * 15 14 13 27 27 H 1.09001 * 109.58133 * 270.89492 * 15 14 13 28 28 H 1.09004 * 109.62300 * 295.75883 * 16 15 14 29 29 H 1.09001 * 109.77391 * 175.29869 * 16 15 14 30 30 H 1.09005 * 109.52219 * 184.61749 * 17 16 15 31 31 H 1.08997 * 109.57495 * 64.45674 * 17 16 15 32 32 H 0.96998 * 119.32291 * 209.03438 * 18 17 16 33 33 H 1.08002 * 120.15517 * 180.25057 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4743 2.0552 -1.4000 5 1 1.4474 2.6482 0.7153 6 1 3.5474 1.4359 0.6846 7 6 2.0079 -1.2118 0.0005 8 1 1.5107 -2.1224 0.3007 9 6 3.3661 -1.2443 -0.3918 10 6 3.8598 -0.3015 -1.3134 11 6 5.1829 -0.3396 -1.6911 12 6 6.0332 -1.2980 -1.1645 13 6 5.5575 -2.2405 -0.2564 14 7 6.4241 -3.2079 0.2648 15 6 7.5072 -2.7936 1.1581 16 6 7.8270 -3.9385 2.1252 17 6 8.1477 -5.1935 1.3064 18 7 7.0298 -5.4775 0.4050 19 6 6.2456 -4.4958 -0.0646 20 8 5.3401 -4.7844 -0.8230 21 6 4.2316 -2.2185 0.1353 22 1 -0.4851 0.8401 -0.0004 23 1 3.2017 0.4503 -1.7233 24 1 5.5610 0.3843 -2.3978 25 1 7.0709 -1.3170 -1.4632 26 1 7.1970 -1.9150 1.7236 27 1 8.3938 -2.5545 0.5708 28 1 6.9651 -4.1291 2.7647 29 1 8.6871 -3.6727 2.7398 30 1 8.2975 -6.0386 1.9785 31 1 9.0531 -5.0273 0.7228 32 1 6.8529 -6.3942 0.1418 33 1 3.8627 -2.9465 0.8426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313452334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:18 Heat of formation + Delta-G solvation = -1.185601 kcal Electronic energy + Delta-G solvation = -17624.966871 eV Core-core repulsion = 14843.402496 eV Total energy + Delta-G solvation = -2781.564375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50164 -37.65256 -36.15294 -34.70743 -33.25144 -30.96015 -30.28155 -28.73739 -25.59879 -25.16434 -23.29244 -21.44309 -20.62289 -19.02533 -17.53210 -17.11388 -16.51674 -15.88566 -15.62934 -14.76484 -14.60550 -14.25466 -13.85964 -13.61778 -13.35765 -12.73455 -12.66549 -12.16037 -11.88317 -11.52281 -11.37023 -11.31979 -10.95292 -10.77786 -10.43815 -9.89897 -9.74677 -9.55373 -9.11145 -8.93748 -8.48832 -7.64870 -7.39520 -6.91247 -4.44493 2.52028 2.65452 3.05127 3.13602 3.24021 3.32737 3.55694 4.00104 4.03605 4.49060 4.63303 4.77272 5.03437 5.27657 5.38598 5.46236 5.48575 5.72237 5.96282 6.06642 6.25514 6.41310 6.53158 6.70325 6.81627 6.93794 7.22656 7.30149 7.49458 7.62387 7.72041 7.91128 8.13974 8.20017 8.40145 8.68469 8.83196 9.02569 10.11335 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035854 B = 0.006509 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.762174 B = 4300.776223 C = 4489.520878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.084 3.916 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.100 3.900 10 C -0.243 4.243 11 C -0.070 4.070 12 C -0.243 4.243 13 C 0.178 3.822 14 N -0.572 5.572 15 C 0.115 3.885 16 C -0.153 4.153 17 C 0.112 3.888 18 N -0.744 5.744 19 C 0.706 3.294 20 O -0.579 6.579 21 C -0.184 4.184 22 H 0.285 0.715 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.340 -3.856 4.865 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.170 1.170 7 C -0.474 4.474 8 H 0.108 0.892 9 C 0.096 3.904 10 C -0.262 4.262 11 C -0.089 4.089 12 C -0.264 4.264 13 C 0.089 3.911 14 N -0.305 5.305 15 C -0.007 4.007 16 C -0.192 4.192 17 C -0.012 4.012 18 N -0.403 5.403 19 C 0.408 3.592 20 O -0.455 6.455 21 C -0.205 4.205 22 H 0.095 0.905 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.248 0.752 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.615 -3.748 4.549 15.759 hybrid contribution 0.331 0.328 -0.016 0.466 sum 14.946 -3.420 4.534 15.989 Atomic orbital electron populations 1.69704 1.08119 1.30229 1.35133 1.26166 0.94710 1.01749 0.90865 0.86301 0.80732 0.79590 0.79086 1.19448 1.22017 1.17045 1.19477 0.93172 0.96200 1.38501 0.89153 1.17579 0.92796 0.90455 0.89572 1.21138 0.95778 1.04820 1.04471 1.20425 0.93591 0.96929 0.97939 1.20302 0.98744 1.02026 1.05279 1.17082 0.89202 0.89346 0.95500 1.44267 1.32271 1.04509 1.49475 1.21537 0.90049 0.97722 0.91438 1.22213 1.03454 0.95195 0.98309 1.21463 0.89385 0.98116 0.92286 1.44958 1.33439 1.09388 1.52546 1.15478 0.82207 0.80869 0.80688 1.91005 1.33881 1.81275 1.39370 1.21036 0.91913 1.03240 1.04274 0.90467 0.87797 0.88445 0.88869 0.89729 0.92031 0.90351 0.88780 0.90296 0.92124 0.75204 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.01 13.93 55.55 0.77 -21.24 16 2 C 0.08 2.25 5.40 -17.35 -0.09 2.16 16 3 Si 0.92 21.08 24.56 -169.99 -4.17 16.91 16 4 H -0.27 -5.99 6.46 56.52 0.37 -5.62 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.25 -5.75 7.04 56.52 0.40 -5.35 16 7 C -0.45 -12.57 9.57 -37.74 -0.36 -12.93 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 C 0.10 2.67 5.13 -106.85 -0.55 2.12 16 10 C -0.24 -6.07 7.30 -38.84 -0.28 -6.35 16 11 C -0.07 -1.57 10.02 -39.69 -0.40 -1.96 16 12 C -0.24 -5.29 9.84 -39.10 -0.38 -5.68 16 13 C 0.18 4.05 4.63 -83.76 -0.39 3.66 16 14 N -0.57 -10.77 2.87 -119.20 -0.34 -11.12 16 15 C 0.12 1.54 6.39 -3.98 -0.03 1.51 16 16 C -0.15 -1.48 6.20 -26.48 -0.16 -1.64 16 17 C 0.11 1.03 7.21 -3.98 -0.03 1.00 16 18 N -0.74 -10.12 5.58 -65.53 -0.37 -10.49 16 19 C 0.71 13.70 8.05 -88.07 -0.71 12.99 16 20 O -0.58 -14.17 16.56 5.29 0.09 -14.08 16 21 C -0.18 -4.67 9.07 -38.69 -0.35 -5.02 16 22 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 23 H 0.10 2.57 4.48 -52.49 -0.23 2.33 16 24 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 25 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.41 4.91 8.88 -40.82 -0.36 4.55 16 33 H 0.10 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 275.55 15.07 4.15 4.15 Total: -1.00 -32.88 275.55 -7.60 -40.48 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.99 Total: 5.54 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.73 Total: -10.15 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.07 Total: -42.85 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.17 Total: 16.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.88 -7.60 -40.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313452334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.292 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds