Wall clock time and date at job start Mon Mar 30 2020 04:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86809 * 120.00072 * 2 1 4 4 H 1.48501 * 109.46462 * 270.72654 * 3 2 1 5 5 H 1.48496 * 109.46953 * 30.72263 * 3 2 1 6 6 H 1.48496 * 109.47421 * 150.72577 * 3 2 1 7 7 C 1.39931 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 341.30914 * 7 2 1 9 9 C 1.41409 * 120.00264 * 161.31250 * 7 2 1 10 10 C 1.40780 * 120.20712 * 331.28862 * 9 7 2 11 11 C 1.37646 * 119.88348 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32190 * 359.73299 * 11 10 9 13 13 C 1.39254 * 120.42924 * 0.54635 * 12 11 10 14 14 N 1.39947 * 119.94888 * 179.72340 * 13 12 11 15 15 C 1.46380 * 119.33013 * 67.35013 * 14 13 12 16 16 C 1.53241 * 109.15261 * 150.96230 * 15 14 13 17 17 C 1.53242 * 108.56316 * 55.48261 * 16 15 14 18 18 N 1.46383 * 109.15182 * 304.51892 * 17 16 15 19 19 C 1.34135 * 121.33851 * 29.06210 * 18 17 16 20 20 O 1.21591 * 118.69300 * 179.14565 * 19 18 17 21 21 C 1.38275 * 120.10137 * 359.45286 * 13 12 11 22 22 H 0.97005 * 120.00379 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.05953 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.83366 * 180.02562 * 11 10 9 25 25 H 1.07999 * 119.78833 * 180.29522 * 12 11 10 26 26 H 1.08997 * 109.52062 * 31.05896 * 15 14 13 27 27 H 1.09001 * 109.58133 * 270.89492 * 15 14 13 28 28 H 1.09004 * 109.62300 * 295.75883 * 16 15 14 29 29 H 1.09001 * 109.77391 * 175.29869 * 16 15 14 30 30 H 1.09005 * 109.52219 * 184.61749 * 17 16 15 31 31 H 1.08997 * 109.57495 * 64.45674 * 17 16 15 32 32 H 0.96998 * 119.32291 * 209.03438 * 18 17 16 33 33 H 1.08002 * 120.15517 * 180.25057 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4743 2.0552 -1.4000 5 1 1.4474 2.6482 0.7153 6 1 3.5474 1.4359 0.6846 7 6 2.0079 -1.2118 0.0005 8 1 1.5107 -2.1224 0.3007 9 6 3.3661 -1.2443 -0.3918 10 6 3.8598 -0.3015 -1.3134 11 6 5.1829 -0.3396 -1.6911 12 6 6.0332 -1.2980 -1.1645 13 6 5.5575 -2.2405 -0.2564 14 7 6.4241 -3.2079 0.2648 15 6 7.5072 -2.7936 1.1581 16 6 7.8270 -3.9385 2.1252 17 6 8.1477 -5.1935 1.3064 18 7 7.0298 -5.4775 0.4050 19 6 6.2456 -4.4958 -0.0646 20 8 5.3401 -4.7844 -0.8230 21 6 4.2316 -2.2185 0.1353 22 1 -0.4851 0.8401 -0.0004 23 1 3.2017 0.4503 -1.7233 24 1 5.5610 0.3843 -2.3978 25 1 7.0709 -1.3170 -1.4632 26 1 7.1970 -1.9150 1.7236 27 1 8.3938 -2.5545 0.5708 28 1 6.9651 -4.1291 2.7647 29 1 8.6871 -3.6727 2.7398 30 1 8.2975 -6.0386 1.9785 31 1 9.0531 -5.0273 0.7228 32 1 6.8529 -6.3942 0.1418 33 1 3.8627 -2.9465 0.8426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313452334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:17 Heat of formation + Delta-G solvation = -24.918575 kcal Electronic energy + Delta-G solvation = -17625.996010 eV Core-core repulsion = 14843.402496 eV Total energy + Delta-G solvation = -2782.593514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90202 -39.44183 -37.50119 -36.24595 -35.08259 -32.29814 -32.07411 -30.38933 -27.15468 -26.66966 -24.65576 -22.93267 -22.50875 -20.48480 -19.03952 -18.47593 -18.01615 -17.67788 -16.95528 -16.50760 -16.26984 -15.74027 -15.16685 -14.80422 -14.67621 -14.51812 -14.34907 -13.84164 -13.39886 -13.10827 -12.82850 -12.74524 -12.33414 -12.27877 -12.23108 -11.74075 -11.59998 -11.20777 -10.98523 -10.22199 -9.92635 -9.58783 -9.15996 -8.91920 -6.55547 0.66152 0.76963 1.26855 1.42164 1.50363 1.73987 2.09529 2.13592 2.54986 2.93357 3.43334 3.79589 3.93661 4.26140 4.30175 4.43190 4.47294 4.58924 4.65080 4.73456 4.81736 4.87155 4.98608 5.03716 5.20340 5.41279 5.42720 5.69929 5.75131 5.81980 5.95375 6.08821 6.22547 6.39093 6.70270 6.77075 6.84635 7.58511 8.17172 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035854 B = 0.006509 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.762174 B = 4300.776223 C = 4489.520878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.046 3.954 3 Si 0.976 3.024 4 H -0.250 1.250 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.490 4.490 8 H 0.043 0.957 9 C 0.081 3.919 10 C -0.255 4.255 11 C -0.066 4.066 12 C -0.226 4.226 13 C 0.183 3.817 14 N -0.578 5.578 15 C 0.103 3.897 16 C -0.146 4.146 17 C 0.106 3.894 18 N -0.729 5.729 19 C 0.696 3.304 20 O -0.646 6.646 21 C -0.211 4.211 22 H 0.296 0.704 23 H 0.107 0.893 24 H 0.142 0.858 25 H 0.131 0.869 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.418 0.582 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.838 -2.766 4.891 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.169 4.169 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.078 3.922 10 C -0.274 4.274 11 C -0.085 4.085 12 C -0.247 4.247 13 C 0.092 3.908 14 N -0.310 5.310 15 C -0.018 4.018 16 C -0.185 4.185 17 C -0.017 4.017 18 N -0.387 5.387 19 C 0.398 3.602 20 O -0.527 6.527 21 C -0.232 4.232 22 H 0.106 0.894 23 H 0.125 0.875 24 H 0.160 0.840 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.256 0.744 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.179 -2.689 4.622 19.910 hybrid contribution -0.856 -0.181 -0.002 0.875 sum 18.323 -2.870 4.620 19.113 Atomic orbital electron populations 1.69730 1.09407 1.31740 1.36673 1.26957 0.95432 1.04544 0.89935 0.85394 0.79224 0.75494 0.80098 1.17485 1.20047 1.17487 1.19418 0.94704 0.95624 1.42155 0.93850 1.17715 0.92285 0.91793 0.90380 1.21276 0.97336 1.04523 1.04252 1.20909 0.92322 0.97465 0.97794 1.20786 1.00446 1.00394 1.03064 1.17239 0.88718 0.89954 0.94871 1.44406 1.32757 1.03753 1.50116 1.21973 0.88911 0.99250 0.91657 1.22263 1.04605 0.93991 0.97592 1.21893 0.88102 0.99373 0.92292 1.44937 1.33380 1.08414 1.51964 1.15808 0.82212 0.81721 0.80475 1.90958 1.36859 1.82432 1.42478 1.21028 0.93724 1.03268 1.05228 0.89366 0.87520 0.84028 0.85117 0.90097 0.89377 0.92076 0.84208 0.86627 0.89688 0.74364 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.60 13.93 21.82 0.30 -48.29 16 2 C 0.05 2.57 5.40 85.25 0.46 3.03 16 3 Si 0.98 43.52 24.56 68.60 1.68 45.21 16 4 H -0.25 -10.34 6.46 99.48 0.64 -9.70 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -11.26 7.04 99.48 0.70 -10.56 16 7 C -0.49 -29.86 9.57 23.46 0.22 -29.63 16 8 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 9 C 0.08 4.55 5.13 -21.31 -0.11 4.44 16 10 C -0.25 -12.57 7.30 22.75 0.17 -12.40 16 11 C -0.07 -2.76 10.02 22.20 0.22 -2.54 16 12 C -0.23 -9.16 9.84 22.58 0.22 -8.94 16 13 C 0.18 8.22 4.63 38.10 0.18 8.39 16 14 N -0.58 -20.97 2.87 -649.66 -1.86 -22.84 16 15 C 0.10 2.39 6.39 86.48 0.55 2.94 16 16 C -0.15 -2.21 6.20 30.76 0.19 -2.02 16 17 C 0.11 1.45 7.21 86.48 0.62 2.07 16 18 N -0.73 -18.26 5.58 -479.84 -2.68 -20.94 16 19 C 0.70 26.69 8.05 179.46 1.44 28.14 16 20 O -0.65 -32.63 16.56 -4.00 -0.07 -32.69 16 21 C -0.21 -11.27 9.07 22.85 0.21 -11.06 16 22 H 0.30 15.00 8.30 -92.70 -0.77 14.24 16 23 H 0.11 5.14 4.48 -2.91 -0.01 5.13 16 24 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 25 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 26 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.42 9.29 8.88 -92.71 -0.82 8.47 16 33 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -78.87 275.55 2.00 -76.87 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.23 Total: 20.26 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.38 Total: -17.58 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -4.24 Total: -92.07 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.07 Total: -32.69 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.68 Total: 45.21 kcal Total: -78.87 2.00 -76.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313452334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.951 kcal (2) G-P(sol) polarization free energy of solvation -78.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds