Wall clock time and date at job start Mon Mar 30 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48498 * 109.46635 * 269.99720 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99485 * 3 2 1 6 6 H 1.48497 * 109.47124 * 149.99773 * 3 2 1 7 7 C 1.39108 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00145 * 0.02562 * 7 2 1 9 9 N 1.36781 * 120.00119 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00427 * 180.02562 * 9 7 2 11 11 O 1.21564 * 119.99964 * 359.97438 * 10 9 7 12 12 C 1.48001 * 120.00171 * 179.97438 * 10 9 7 13 13 C 1.39429 * 119.81410 * 180.02562 * 12 10 9 14 14 C 1.38308 * 118.73145 * 180.02562 * 13 12 10 15 15 C 1.39205 * 118.98343 * 359.90953 * 14 13 12 16 16 C 1.38010 * 119.34655 * 359.93727 * 15 14 13 17 17 N 1.32363 * 120.22624 * 0.22529 * 16 15 14 18 18 C 1.50748 * 122.29155 * 180.39349 * 16 15 14 19 19 C 1.52721 * 110.56903 * 342.11663 * 18 16 15 20 20 C 1.53318 * 108.44076 * 51.35476 * 19 18 16 21 21 C 1.50529 * 117.88434 * 179.72698 * 15 14 13 22 22 H 0.96999 * 119.99814 * 0.02562 * 1 2 3 23 23 H 0.97007 * 119.99941 * 359.97438 * 9 7 2 24 24 H 1.07993 * 120.63587 * 0.12861 * 13 12 10 25 25 H 1.07995 * 120.50972 * 180.18554 * 14 13 12 26 26 H 1.09003 * 109.25948 * 221.84038 * 18 16 15 27 27 H 1.08997 * 109.22424 * 102.37824 * 18 16 15 28 28 H 1.08998 * 109.64387 * 291.66874 * 19 18 16 29 29 H 1.09004 * 109.63982 * 171.03929 * 19 18 16 30 30 H 1.08994 * 109.68518 * 170.28718 * 20 19 18 31 31 H 1.09009 * 109.68480 * 49.72980 * 20 19 18 32 32 H 1.09008 * 109.26305 * 282.95814 * 21 15 14 33 33 H 1.08997 * 109.25980 * 42.40307 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0462 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5448 1.4401 0.7001 7 6 2.0087 -1.2047 0.0005 8 1 1.4687 -2.1400 0.0005 9 7 3.3766 -1.2048 0.0011 10 6 4.0504 -2.3720 0.0011 11 8 3.4426 -3.4248 0.0011 12 6 5.5304 -2.3720 0.0011 13 6 6.2236 -3.5818 0.0005 14 6 7.6065 -3.5557 0.0011 15 6 8.2579 -2.3255 0.0002 16 6 7.5113 -1.1648 -0.0024 17 7 6.1889 -1.2231 0.0003 18 6 8.1473 0.2019 -0.0123 19 6 9.6093 0.1164 0.4208 20 6 10.3021 -0.9621 -0.4203 21 6 9.7632 -2.3259 0.0072 22 1 -0.4850 0.8401 -0.0004 23 1 3.8616 -0.3648 0.0007 24 1 5.6910 -4.5212 -0.0020 25 1 8.1722 -4.4756 -0.0023 26 1 7.6070 0.8549 0.6732 27 1 8.0943 0.6152 -1.0194 28 1 9.6638 -0.1508 1.4762 29 1 10.0966 1.0777 0.2575 30 1 11.3783 -0.9235 -0.2526 31 1 10.0885 -0.7975 -1.4765 32 1 10.1181 -2.5536 1.0124 33 1 10.1257 -3.0880 -0.6826 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336550824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:53 Heat of formation + Delta-G solvation = -17.854835 kcal Electronic energy + Delta-G solvation = -17230.888473 eV Core-core repulsion = 14448.601266 eV Total energy + Delta-G solvation = -2782.287207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46129 -38.19398 -36.20923 -34.13566 -33.16937 -31.77610 -30.34901 -29.61789 -25.74962 -24.10065 -23.03304 -22.48072 -20.29715 -19.30458 -18.58809 -16.75674 -16.32682 -15.62320 -14.99605 -14.51359 -14.21223 -13.98441 -13.90885 -13.77058 -13.29901 -13.03662 -12.72014 -12.66374 -12.26774 -12.07845 -11.66944 -11.21804 -11.06161 -10.92614 -10.69630 -10.56459 -10.09032 -9.66526 -9.45213 -9.34284 -8.59115 -8.47112 -8.26099 -6.47943 -3.88109 1.09067 1.50758 3.04500 3.12276 3.13853 3.48231 4.03540 4.23934 4.41015 4.55411 4.61043 4.74394 4.79377 4.96024 5.11697 5.23535 5.37275 5.42484 5.44938 5.51731 5.63617 5.72865 5.84273 5.85704 5.92909 5.98700 6.11020 6.15718 6.45528 6.47527 6.94541 7.45017 8.04073 8.18834 8.52220 8.82653 9.32890 9.79820 10.62944 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.006592 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.331065 B = 4246.853842 C = 5177.407304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.046 3.954 3 Si 0.877 3.123 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.298 4.298 8 H 0.125 0.875 9 N -0.547 5.547 10 C 0.476 3.524 11 O -0.582 6.582 12 C 0.120 3.880 13 C -0.131 4.131 14 C -0.083 4.083 15 C -0.137 4.137 16 C 0.132 3.868 17 N -0.481 5.481 18 C -0.069 4.069 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.072 4.072 22 H 0.278 0.722 23 H 0.384 0.616 24 H 0.145 0.855 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.966 1.045 -0.001 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.160 4.160 3 Si 0.702 3.298 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.428 4.428 8 H 0.142 0.858 9 N -0.182 5.182 10 C 0.263 3.737 11 O -0.467 6.467 12 C -0.021 4.021 13 C -0.153 4.153 14 C -0.109 4.109 15 C -0.140 4.140 16 C -0.006 4.006 17 N -0.193 5.193 18 C -0.107 4.107 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.110 4.110 22 H 0.089 0.911 23 H 0.219 0.781 24 H 0.162 0.838 25 H 0.151 0.849 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.801 1.255 0.001 19.841 hybrid contribution 0.896 0.454 0.002 1.004 sum 20.697 1.709 0.003 20.768 Atomic orbital electron populations 1.69591 1.05889 1.28247 1.46071 1.25160 0.95580 0.98487 0.96790 0.86661 0.80402 0.83210 0.79562 1.19139 1.19802 1.18423 1.19622 0.79415 0.96972 1.46748 0.85760 1.42151 1.07412 1.07146 1.61506 1.17173 0.84353 0.84755 0.87427 1.90638 1.67810 1.30831 1.57412 1.21560 0.95520 0.88685 0.96294 1.22019 0.93970 0.99828 0.99435 1.21491 0.94192 0.97510 0.97722 1.20464 0.96628 0.93401 1.03515 1.20962 0.88785 0.94799 0.96049 1.67536 1.09487 1.29760 1.12505 1.20359 0.94874 0.92420 1.03036 1.21561 0.94671 0.99181 1.00169 1.21569 0.99566 0.94412 1.00278 1.20366 0.90511 0.98154 1.01935 0.91102 0.78117 0.83769 0.84947 0.89759 0.89986 0.91500 0.91055 0.91393 0.91505 0.90701 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.79 13.95 55.50 0.77 -24.02 16 2 C 0.05 1.27 5.50 -17.44 -0.10 1.18 16 3 Si 0.88 19.90 27.74 -169.99 -4.72 15.19 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.64 6.52 56.52 0.37 -5.27 16 7 C -0.30 -8.66 10.16 -15.02 -0.15 -8.81 16 8 H 0.12 4.03 7.38 -52.49 -0.39 3.64 16 9 N -0.55 -14.33 5.07 -11.80 -0.06 -14.39 16 10 C 0.48 12.19 7.76 -12.26 -0.10 12.09 16 11 O -0.58 -16.57 15.91 5.31 0.08 -16.49 16 12 C 0.12 2.54 6.75 -83.16 -0.56 1.98 16 13 C -0.13 -2.34 9.64 -39.11 -0.38 -2.71 16 14 C -0.08 -1.17 9.74 -39.20 -0.38 -1.55 16 15 C -0.14 -1.86 5.75 -104.43 -0.60 -2.46 16 16 C 0.13 2.06 6.62 -82.42 -0.55 1.52 16 17 N -0.48 -9.38 9.37 -6.09 -0.06 -9.44 16 18 C -0.07 -0.84 5.91 -28.00 -0.17 -1.01 16 19 C -0.12 -1.06 5.97 -26.71 -0.16 -1.22 16 20 C -0.12 -1.00 5.98 -26.69 -0.16 -1.16 16 21 C -0.07 -0.68 5.68 -28.09 -0.16 -0.84 16 22 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.38 9.33 5.09 -40.82 -0.21 9.12 16 24 H 0.14 2.52 7.66 -52.49 -0.40 2.12 16 25 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -32.33 279.76 -7.18 -39.50 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -3.96 Total: 8.42 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.45 Total: -3.00 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.66 Total: -47.84 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.08 Total: -16.49 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.72 Total: 15.19 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.33 -7.18 -39.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336550824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.649 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds