Wall clock time and date at job start Mon Mar 30 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.87057 * 2 1 4 4 O 1.43740 * 110.00660 * 238.90961 * 2 1 3 5 5 C 1.44384 * 106.97804 * 213.99440 * 4 2 1 6 6 C 1.54991 * 103.49217 * 40.05558 * 5 4 2 7 7 C 1.54102 * 109.87974 * 121.00050 * 2 1 3 8 8 H 1.08996 * 110.49165 * 240.28375 * 7 2 1 9 9 S 1.81400 * 110.60045 * 2.87489 * 7 2 1 10 10 C 1.81396 * 103.00117 * 181.28466 * 9 7 2 11 11 C 1.52997 * 109.47376 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.47458 * 180.02562 * 11 10 9 13 13 C 1.42901 * 113.99982 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46679 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00483 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99615 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00288 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00163 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46915 * 89.99846 * 18 16 14 20 20 H 1.48497 * 109.47211 * 210.00437 * 18 16 14 21 21 H 1.48506 * 109.46779 * 330.00334 * 18 16 14 22 22 H 1.09001 * 109.47413 * 298.99410 * 1 2 3 23 23 H 1.08994 * 109.47465 * 58.99855 * 1 2 3 24 24 H 1.09007 * 109.47121 * 178.99450 * 1 2 3 25 25 H 1.09001 * 110.61383 * 281.56059 * 5 4 2 26 26 H 1.08997 * 110.62382 * 158.56212 * 5 4 2 27 27 H 1.08996 * 110.90945 * 204.78120 * 6 5 4 28 28 H 1.09004 * 110.90588 * 81.17385 * 6 5 4 29 29 H 1.09006 * 109.47101 * 300.00218 * 10 9 7 30 30 H 1.08996 * 109.47268 * 59.99762 * 10 9 7 31 31 H 1.08996 * 109.47149 * 300.00185 * 11 10 9 32 32 H 1.09009 * 109.47036 * 59.99902 * 11 10 9 33 33 H 1.08999 * 109.47077 * 299.99797 * 13 12 11 34 34 H 1.08996 * 109.47154 * 59.99906 * 13 12 11 35 35 H 0.96996 * 120.00402 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6975 -1.1566 5 6 3.2418 -1.3609 -0.7618 6 6 2.9228 -1.8881 0.6604 7 6 2.0540 -0.7464 1.2422 8 1 2.6597 -0.0825 1.8589 9 16 0.6762 -1.4256 2.2071 10 6 1.5108 -2.2104 3.6135 11 6 0.4678 -2.8418 4.5379 12 8 1.1253 -3.4596 5.6462 13 6 0.2364 -4.0833 6.5752 14 6 1.0331 -4.6993 7.6963 15 1 2.1103 -4.6227 7.6989 16 6 0.3866 -5.3608 8.7188 17 7 -0.9253 -5.4546 8.7155 18 14 1.3738 -6.1239 10.1090 19 1 1.5480 -5.1283 11.1969 20 1 0.6528 -7.3108 10.6347 21 1 2.7058 -6.5391 9.6001 22 1 -0.3634 0.4981 0.8989 23 1 -0.3634 0.5293 -0.8808 24 1 -0.3634 -1.0276 -0.0180 25 1 4.0708 -0.6539 -0.7319 26 1 3.4650 -2.1874 -1.4364 27 1 3.8359 -2.0168 1.2415 28 1 2.3591 -2.8199 0.6125 29 1 2.1880 -2.9829 3.2491 30 1 2.0781 -1.4602 4.1642 31 1 -0.2097 -2.0697 4.9022 32 1 -0.0992 -3.5923 3.9869 33 1 -0.4465 -3.3372 6.9815 34 1 -0.3347 -4.8598 6.0664 35 1 -1.3801 -5.9196 9.4349 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338557748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:27 Heat of formation + Delta-G solvation = -105.532487 kcal Electronic energy + Delta-G solvation = -15438.100364 eV Core-core repulsion = 12755.162369 eV Total energy + Delta-G solvation = -2682.937995 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.69079 -36.87157 -32.89235 -32.69264 -31.92557 -30.75472 -27.06330 -26.26984 -22.85004 -22.42174 -22.22145 -21.23981 -17.03226 -16.62584 -16.33281 -16.03139 -15.74291 -15.42511 -14.92835 -14.47767 -13.88973 -13.65298 -13.41024 -13.00006 -12.81324 -12.48393 -12.23415 -11.83941 -11.52017 -11.31678 -11.25862 -11.18536 -10.82943 -10.77894 -10.76047 -10.10495 -10.00818 -9.76449 -9.15730 -8.89559 -8.24391 -7.68112 -6.14262 -4.16757 1.48307 2.48992 3.28256 3.33218 3.38423 3.53731 4.08106 4.32717 4.43834 4.70837 4.75039 4.88217 4.89190 5.09921 5.17509 5.21889 5.22086 5.34683 5.42273 5.60978 5.66280 5.72765 5.74774 5.77529 6.07899 6.12429 6.16848 6.58511 7.04732 7.37466 7.74789 8.09532 8.49089 8.95476 9.48114 10.97205 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058337 B = 0.003542 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.853476 B = 7903.942632 C = 8236.077141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 H 0.077 0.923 4 O -0.370 6.370 5 C 0.050 3.950 6 C -0.153 4.153 7 C -0.097 4.097 8 H 0.099 0.901 9 S -0.212 6.212 10 C -0.098 4.098 11 C 0.081 3.919 12 O -0.395 6.395 13 C 0.196 3.804 14 C -0.518 4.518 15 H 0.067 0.933 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.909 3.091 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 10.268 -17.525 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.095 0.905 4 O -0.289 6.289 5 C -0.028 4.028 6 C -0.192 4.192 7 C -0.226 4.226 8 H 0.117 0.883 9 S 0.016 5.984 10 C -0.246 4.246 11 C 0.003 3.997 12 O -0.316 6.316 13 C 0.122 3.878 14 C -0.556 4.556 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.736 3.264 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.653 10.235 -17.774 21.032 hybrid contribution 1.580 -0.494 1.357 2.140 sum 6.233 9.741 -16.418 20.082 Atomic orbital electron populations 1.21865 0.92914 1.04288 1.02789 1.22505 0.95953 0.94880 0.82670 0.90535 1.88910 1.39556 1.67864 1.32615 1.23520 0.87594 0.96533 0.95118 1.23604 1.00398 0.98646 0.96580 1.24644 0.98421 0.99926 0.99648 0.88277 1.86880 1.14074 1.71585 1.25828 1.23420 1.01618 1.02682 0.96860 1.21769 0.93025 0.96216 0.88728 1.87837 1.35855 1.73402 1.34461 1.20245 0.89567 0.91461 0.86563 1.21044 0.94261 1.34632 1.05642 0.91521 1.24958 0.95095 0.96105 0.98305 1.69962 1.07426 1.42895 1.33348 0.86314 0.79900 0.78647 0.81503 1.20412 1.21004 1.19614 0.89912 0.91498 0.90435 0.92040 0.88552 0.89690 0.88868 0.89639 0.89701 0.93624 0.93604 0.97490 0.97476 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.30 37.16 0.31 -1.28 16 2 C 0.10 0.97 4.05 -26.16 -0.11 0.87 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.37 -4.08 11.19 -35.23 -0.39 -4.47 16 5 C 0.05 0.42 7.72 38.21 0.29 0.72 16 6 C -0.15 -1.42 6.59 -24.72 -0.16 -1.58 16 7 C -0.10 -0.99 3.55 -25.20 -0.09 -1.08 16 8 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 9 S -0.21 -2.74 17.85 -107.50 -1.92 -4.66 16 10 C -0.10 -1.49 6.18 37.16 0.23 -1.26 16 11 C 0.08 1.56 5.95 37.16 0.22 1.78 16 12 O -0.40 -9.66 10.33 -35.23 -0.36 -10.03 16 13 C 0.20 5.44 5.69 36.01 0.20 5.65 16 14 C -0.52 -15.32 9.43 -34.44 -0.32 -15.65 16 15 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 18 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H 0.08 0.80 7.39 -51.93 -0.38 0.42 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.87 7.17 -51.92 -0.37 0.50 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 29 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -31.30 302.65 -7.70 -39.00 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -5.78 Total: -4.70 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.48 Total: -10.29 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.76 Total: -14.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.92 Total: -4.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.30 -7.70 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338557748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.528 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds