Wall clock time and date at job start Mon Mar 30 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.87057 * 2 1 4 4 O 1.43740 * 110.00660 * 238.90961 * 2 1 3 5 5 C 1.44384 * 106.97804 * 213.99440 * 4 2 1 6 6 C 1.54991 * 103.49217 * 40.05558 * 5 4 2 7 7 C 1.54102 * 109.87974 * 121.00050 * 2 1 3 8 8 H 1.08996 * 110.49165 * 240.28375 * 7 2 1 9 9 S 1.81400 * 110.60045 * 2.87489 * 7 2 1 10 10 C 1.81396 * 103.00117 * 181.28466 * 9 7 2 11 11 C 1.52997 * 109.47376 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.47458 * 180.02562 * 11 10 9 13 13 C 1.42901 * 113.99982 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46679 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00483 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99615 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00288 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00163 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46915 * 89.99846 * 18 16 14 20 20 H 1.48497 * 109.47211 * 210.00437 * 18 16 14 21 21 H 1.48506 * 109.46779 * 330.00334 * 18 16 14 22 22 H 1.09001 * 109.47413 * 298.99410 * 1 2 3 23 23 H 1.08994 * 109.47465 * 58.99855 * 1 2 3 24 24 H 1.09007 * 109.47121 * 178.99450 * 1 2 3 25 25 H 1.09001 * 110.61383 * 281.56059 * 5 4 2 26 26 H 1.08997 * 110.62382 * 158.56212 * 5 4 2 27 27 H 1.08996 * 110.90945 * 204.78120 * 6 5 4 28 28 H 1.09004 * 110.90588 * 81.17385 * 6 5 4 29 29 H 1.09006 * 109.47101 * 300.00218 * 10 9 7 30 30 H 1.08996 * 109.47268 * 59.99762 * 10 9 7 31 31 H 1.08996 * 109.47149 * 300.00185 * 11 10 9 32 32 H 1.09009 * 109.47036 * 59.99902 * 11 10 9 33 33 H 1.08999 * 109.47077 * 299.99797 * 13 12 11 34 34 H 1.08996 * 109.47154 * 59.99906 * 13 12 11 35 35 H 0.96996 * 120.00402 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6975 -1.1566 5 6 3.2418 -1.3609 -0.7618 6 6 2.9228 -1.8881 0.6604 7 6 2.0540 -0.7464 1.2422 8 1 2.6597 -0.0825 1.8589 9 16 0.6762 -1.4256 2.2071 10 6 1.5108 -2.2104 3.6135 11 6 0.4678 -2.8418 4.5379 12 8 1.1253 -3.4596 5.6462 13 6 0.2364 -4.0833 6.5752 14 6 1.0331 -4.6993 7.6963 15 1 2.1103 -4.6227 7.6989 16 6 0.3866 -5.3608 8.7188 17 7 -0.9253 -5.4546 8.7155 18 14 1.3738 -6.1239 10.1090 19 1 1.5480 -5.1283 11.1969 20 1 0.6528 -7.3108 10.6347 21 1 2.7058 -6.5391 9.6001 22 1 -0.3634 0.4981 0.8989 23 1 -0.3634 0.5293 -0.8808 24 1 -0.3634 -1.0276 -0.0180 25 1 4.0708 -0.6539 -0.7319 26 1 3.4650 -2.1874 -1.4364 27 1 3.8359 -2.0168 1.2415 28 1 2.3591 -2.8199 0.6125 29 1 2.1880 -2.9829 3.2491 30 1 2.0781 -1.4602 4.1642 31 1 -0.2097 -2.0697 4.9022 32 1 -0.0992 -3.5923 3.9869 33 1 -0.4465 -3.3372 6.9815 34 1 -0.3347 -4.8598 6.0664 35 1 -1.3801 -5.9196 9.4349 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338557748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:27 Heat of formation + Delta-G solvation = -125.334188 kcal Electronic energy + Delta-G solvation = -15438.959030 eV Core-core repulsion = 12755.162369 eV Total energy + Delta-G solvation = -2683.796661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44206 -38.76628 -35.05140 -33.48151 -32.89785 -32.12126 -29.18724 -27.05610 -24.67942 -24.00367 -23.14481 -22.10031 -18.69745 -17.82271 -17.73791 -17.21124 -17.05637 -16.68898 -16.48331 -15.85093 -15.25519 -14.96205 -14.67605 -14.30970 -13.94017 -13.63585 -13.29608 -13.08271 -13.00027 -12.83352 -12.55161 -12.50567 -12.25253 -12.07115 -12.02084 -11.97395 -11.34164 -10.93316 -10.80736 -10.68930 -10.34827 -8.71864 -8.35177 -6.48882 0.44317 1.39557 1.42724 1.44523 1.54933 2.33483 2.82343 2.98686 3.19150 3.32350 3.68774 3.83275 3.97276 4.05352 4.07864 4.21999 4.32265 4.34566 4.50640 4.63532 4.65904 4.67159 4.78733 4.85327 4.88844 4.97667 5.02822 5.10308 5.27725 5.50685 5.87033 5.89630 6.43160 6.73198 7.22999 8.77276 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058337 B = 0.003542 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.853476 B = 7903.942632 C = 8236.077141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 H 0.097 0.903 4 O -0.391 6.391 5 C 0.050 3.950 6 C -0.153 4.153 7 C -0.091 4.091 8 H 0.114 0.886 9 S -0.222 6.222 10 C -0.090 4.090 11 C 0.075 3.925 12 O -0.407 6.407 13 C 0.208 3.792 14 C -0.553 4.553 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.263 1.263 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.044 0.956 33 H -0.011 1.011 34 H -0.012 1.012 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 10.717 -17.686 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.115 0.885 4 O -0.311 6.311 5 C -0.027 4.027 6 C -0.192 4.192 7 C -0.220 4.220 8 H 0.133 0.867 9 S 0.006 5.994 10 C -0.238 4.238 11 C -0.002 4.002 12 O -0.328 6.328 13 C 0.133 3.867 14 C -0.590 4.590 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.187 1.187 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.202 10.695 -17.956 21.800 hybrid contribution 1.050 -0.569 1.272 1.745 sum 7.252 10.126 -16.684 20.820 Atomic orbital electron populations 1.21841 0.93387 1.03271 1.03319 1.22607 0.95707 0.95663 0.82117 0.88512 1.88891 1.40720 1.68277 1.33170 1.23686 0.87257 0.97245 0.94550 1.23596 1.00527 0.97633 0.97485 1.24778 0.97343 1.00448 0.99469 0.86746 1.86984 1.15696 1.71605 1.25073 1.23230 1.00529 1.02870 0.97185 1.22004 0.94402 0.96053 0.87787 1.87785 1.35933 1.73552 1.35480 1.19891 0.89372 0.90491 0.86911 1.21387 0.94421 1.36161 1.07071 0.91750 1.26009 0.96289 0.95978 1.00947 1.70071 1.09219 1.43149 1.34473 0.85130 0.78369 0.77961 0.77625 1.19169 1.19859 1.18730 0.89836 0.90469 0.92159 0.90072 0.87462 0.88328 0.90351 0.89299 0.89204 0.93576 0.93729 0.99358 0.99407 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 8.30 71.98 0.60 -2.38 16 2 C 0.10 1.73 4.05 30.97 0.13 1.85 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 4 O -0.39 -7.85 11.19 -148.98 -1.67 -9.52 16 5 C 0.05 0.72 7.72 72.66 0.56 1.28 16 6 C -0.15 -2.55 6.59 31.90 0.21 -2.34 16 7 C -0.09 -1.68 3.55 31.59 0.11 -1.57 16 8 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 9 S -0.22 -5.58 17.85 -56.49 -1.01 -6.59 16 10 C -0.09 -2.71 6.18 71.98 0.44 -2.26 16 11 C 0.08 2.94 5.95 71.98 0.43 3.37 16 12 O -0.41 -20.35 10.33 -148.98 -1.54 -21.89 16 13 C 0.21 11.97 5.69 71.24 0.41 12.37 16 14 C -0.55 -33.22 9.43 25.60 0.24 -32.98 16 15 H 0.06 3.80 7.81 -2.91 -0.02 3.77 16 16 C 0.01 0.38 5.46 84.65 0.46 0.84 16 17 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 18 Si 0.99 44.20 29.54 68.60 2.03 46.23 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H 0.08 1.52 7.39 -2.39 -0.02 1.51 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.33 7.17 -2.38 -0.02 1.31 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.55 7.83 -2.38 -0.02 1.53 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -67.02 302.65 2.73 -64.30 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.04 Total: 5.20 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 3.59 Total: -21.82 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.28 Total: -55.92 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -3.21 Total: -31.41 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.01 Total: -6.59 kcal Total: -67.02 2.73 -64.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338557748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.036 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds