Wall clock time and date at job start Mon Mar 30 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.82845 * 2 1 4 4 O 1.43240 * 109.82863 * 120.98523 * 2 1 3 5 5 C 1.43693 * 109.99409 * 117.84116 * 4 2 1 6 6 C 1.54944 * 105.11450 * 24.36003 * 5 4 2 7 7 C 1.54384 * 109.82953 * 239.11217 * 2 1 3 8 8 H 1.08991 * 110.84918 * 337.32649 * 7 2 1 9 9 S 1.81410 * 110.84251 * 100.94376 * 7 2 1 10 10 C 1.81405 * 102.99597 * 179.28571 * 9 7 2 11 11 C 1.53001 * 109.46690 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46548 * 179.97438 * 11 10 9 13 13 C 1.42904 * 113.99354 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46688 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99696 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00098 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99851 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47447 * 119.99271 * 18 16 14 21 21 H 1.48499 * 109.46752 * 239.99749 * 18 16 14 22 22 H 1.09001 * 109.47612 * 180.88102 * 1 2 3 23 23 H 1.09007 * 109.47334 * 300.88530 * 1 2 3 24 24 H 1.09003 * 109.47286 * 60.88160 * 1 2 3 25 25 H 1.08996 * 110.28653 * 265.46723 * 5 4 2 26 26 H 1.09004 * 110.35260 * 143.28919 * 5 4 2 27 27 H 1.09002 * 111.12633 * 205.67462 * 6 5 4 28 28 H 1.08995 * 111.12590 * 81.55464 * 6 5 4 29 29 H 1.09001 * 109.47115 * 300.00086 * 10 9 7 30 30 H 1.09000 * 109.47236 * 59.99748 * 10 9 7 31 31 H 1.08989 * 109.47364 * 299.99677 * 11 10 9 32 32 H 1.09002 * 109.46802 * 60.00197 * 11 10 9 33 33 H 1.08998 * 109.47232 * 299.99741 * 13 12 11 34 34 H 1.08994 * 109.47315 * 60.00361 * 13 12 11 35 35 H 0.97005 * 120.00317 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 8 2.0158 -0.6937 1.1552 5 6 2.7757 -1.8452 0.7533 6 6 3.2729 -1.5216 -0.6781 7 6 2.0537 -0.7455 -1.2463 8 1 1.3011 -1.4335 -1.6315 9 16 2.5754 0.4273 -2.5282 10 6 3.1611 -0.6571 -3.8593 11 6 3.6434 0.1942 -5.0355 12 8 4.1053 -0.6601 -6.0839 13 6 4.5811 0.0389 -7.2360 14 6 5.0399 -0.9546 -8.2722 15 1 4.9751 -2.0137 -8.0709 16 6 5.5434 -0.5113 -9.4768 17 7 5.6227 0.7784 -9.7217 18 14 6.1128 -1.7426 -10.7610 19 1 5.9203 -3.1215 -10.2443 20 1 5.3199 -1.5642 -12.0038 21 1 7.5513 -1.5211 -11.0554 22 1 -0.3634 -1.0275 0.0158 23 1 -0.3634 0.5275 0.8820 24 1 -0.3634 0.5001 -0.8978 25 1 2.1415 -2.7315 0.7422 26 1 3.6225 -1.9934 1.4236 27 1 3.4571 -2.4339 -1.2455 28 1 4.1621 -0.8918 -0.6521 29 1 3.9841 -1.2705 -3.4926 30 1 2.3459 -1.3018 -4.1879 31 1 2.8201 0.8072 -5.4021 32 1 4.4585 0.8391 -4.7071 33 1 3.7774 0.6487 -7.6486 34 1 5.4154 0.6805 -6.9528 35 1 5.9766 1.0903 -10.5693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338557750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:32 Heat of formation + Delta-G solvation = -108.029843 kcal Electronic energy + Delta-G solvation = -15335.180975 eV Core-core repulsion = 12652.134686 eV Total energy + Delta-G solvation = -2683.046288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73388 -36.90891 -32.90913 -32.69541 -31.85051 -30.88106 -27.07329 -26.44691 -22.92878 -22.31596 -22.23208 -21.20422 -17.55496 -16.68836 -16.39154 -16.03861 -15.46973 -15.20263 -14.66824 -14.48221 -14.14104 -13.62538 -13.51321 -13.08061 -13.03600 -12.36031 -12.28584 -12.06691 -11.78280 -11.35818 -11.22877 -11.18479 -10.86281 -10.80167 -10.77435 -10.11623 -9.98308 -9.84893 -9.16206 -8.92419 -8.26772 -7.77666 -6.15776 -4.18245 1.40074 2.40216 3.26226 3.32705 3.38874 3.50917 4.02281 4.31307 4.35431 4.66133 4.76568 4.82435 4.86233 5.02588 5.11288 5.20755 5.25169 5.31140 5.39954 5.51824 5.61275 5.67383 5.69258 5.79134 5.89413 6.07602 6.12179 6.67035 7.02464 7.35442 7.73443 8.07557 8.46256 8.94115 9.46732 10.95714 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058154 B = 0.003424 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.364202 B = 8175.829059 C = 8426.960658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 H 0.090 0.910 4 O -0.375 6.375 5 C 0.054 3.946 6 C -0.153 4.153 7 C -0.094 4.094 8 H 0.102 0.898 9 S -0.228 6.228 10 C -0.082 4.082 11 C 0.080 3.920 12 O -0.394 6.394 13 C 0.196 3.804 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -2.941 19.179 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.108 0.892 4 O -0.295 6.295 5 C -0.024 4.024 6 C -0.193 4.193 7 C -0.224 4.224 8 H 0.120 0.880 9 S 0.001 5.999 10 C -0.230 4.230 11 C 0.001 3.999 12 O -0.315 6.315 13 C 0.121 3.879 14 C -0.556 4.556 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.710 -1.832 19.249 20.817 hybrid contribution 0.405 -1.644 -1.137 2.040 sum -7.305 -3.476 18.112 19.836 Atomic orbital electron populations 1.22157 0.94002 1.02768 1.02989 1.22451 0.94555 0.96267 0.82349 0.89223 1.88456 1.70954 1.40537 1.29565 1.23363 0.95186 0.88852 0.94967 1.23699 0.97919 1.01420 0.96234 1.24808 1.00476 0.99560 0.97518 0.87977 1.86705 1.83015 1.15461 1.14762 1.23305 1.04021 1.00004 0.95682 1.21787 0.98107 0.92252 0.87753 1.87838 1.82833 1.34079 1.26733 1.20260 0.93237 0.93110 0.81246 1.21080 1.41684 0.93805 0.98980 0.91447 1.24960 0.95637 0.95664 0.98225 1.69970 1.45955 1.13097 1.24573 0.86260 0.78287 0.81079 0.80752 1.19471 1.20767 1.20772 0.92142 0.91511 0.90767 0.92039 0.89252 0.89369 0.88778 0.89356 0.89414 0.93488 0.93492 0.97447 0.97441 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.44 37.16 0.35 -1.03 16 2 C 0.10 1.03 3.79 -26.01 -0.10 0.93 16 3 H 0.09 0.96 7.77 -51.93 -0.40 0.56 16 4 O -0.38 -4.10 11.02 -35.23 -0.39 -4.49 16 5 C 0.05 0.46 7.78 38.18 0.30 0.76 16 6 C -0.15 -1.40 6.51 -24.48 -0.16 -1.56 16 7 C -0.09 -0.97 3.05 -24.78 -0.08 -1.04 16 8 H 0.10 0.98 7.85 -51.93 -0.41 0.58 16 9 S -0.23 -2.95 21.02 -107.50 -2.26 -5.21 16 10 C -0.08 -1.22 6.19 37.16 0.23 -0.99 16 11 C 0.08 1.50 5.95 37.16 0.22 1.72 16 12 O -0.39 -9.51 10.33 -35.23 -0.36 -9.87 16 13 C 0.20 5.39 5.69 36.01 0.20 5.59 16 14 C -0.52 -15.21 9.43 -34.44 -0.32 -15.53 16 15 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 18 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 29 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.05 0.87 8.14 -51.94 -0.42 0.45 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -30.96 307.26 -7.96 -38.92 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.85 Total: -4.99 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 0.55 Total: -9.62 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.75 Total: -14.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.26 Total: -5.21 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.96 -7.96 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338557750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.109 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds