Wall clock time and date at job start Mon Mar 30 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.82845 * 2 1 4 4 O 1.43240 * 109.82863 * 120.98523 * 2 1 3 5 5 C 1.43693 * 109.99409 * 117.84116 * 4 2 1 6 6 C 1.54944 * 105.11450 * 24.36003 * 5 4 2 7 7 C 1.54384 * 109.82953 * 239.11217 * 2 1 3 8 8 H 1.08991 * 110.84918 * 337.32649 * 7 2 1 9 9 S 1.81410 * 110.84251 * 100.94376 * 7 2 1 10 10 C 1.81405 * 102.99597 * 179.28571 * 9 7 2 11 11 C 1.53001 * 109.46690 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46548 * 179.97438 * 11 10 9 13 13 C 1.42904 * 113.99354 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46688 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99696 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00098 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99851 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47447 * 119.99271 * 18 16 14 21 21 H 1.48499 * 109.46752 * 239.99749 * 18 16 14 22 22 H 1.09001 * 109.47612 * 180.88102 * 1 2 3 23 23 H 1.09007 * 109.47334 * 300.88530 * 1 2 3 24 24 H 1.09003 * 109.47286 * 60.88160 * 1 2 3 25 25 H 1.08996 * 110.28653 * 265.46723 * 5 4 2 26 26 H 1.09004 * 110.35260 * 143.28919 * 5 4 2 27 27 H 1.09002 * 111.12633 * 205.67462 * 6 5 4 28 28 H 1.08995 * 111.12590 * 81.55464 * 6 5 4 29 29 H 1.09001 * 109.47115 * 300.00086 * 10 9 7 30 30 H 1.09000 * 109.47236 * 59.99748 * 10 9 7 31 31 H 1.08989 * 109.47364 * 299.99677 * 11 10 9 32 32 H 1.09002 * 109.46802 * 60.00197 * 11 10 9 33 33 H 1.08998 * 109.47232 * 299.99741 * 13 12 11 34 34 H 1.08994 * 109.47315 * 60.00361 * 13 12 11 35 35 H 0.97005 * 120.00317 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 8 2.0158 -0.6937 1.1552 5 6 2.7757 -1.8452 0.7533 6 6 3.2729 -1.5216 -0.6781 7 6 2.0537 -0.7455 -1.2463 8 1 1.3011 -1.4335 -1.6315 9 16 2.5754 0.4273 -2.5282 10 6 3.1611 -0.6571 -3.8593 11 6 3.6434 0.1942 -5.0355 12 8 4.1053 -0.6601 -6.0839 13 6 4.5811 0.0389 -7.2360 14 6 5.0399 -0.9546 -8.2722 15 1 4.9751 -2.0137 -8.0709 16 6 5.5434 -0.5113 -9.4768 17 7 5.6227 0.7784 -9.7217 18 14 6.1128 -1.7426 -10.7610 19 1 5.9203 -3.1215 -10.2443 20 1 5.3199 -1.5642 -12.0038 21 1 7.5513 -1.5211 -11.0554 22 1 -0.3634 -1.0275 0.0158 23 1 -0.3634 0.5275 0.8820 24 1 -0.3634 0.5001 -0.8978 25 1 2.1415 -2.7315 0.7422 26 1 3.6225 -1.9934 1.4236 27 1 3.4571 -2.4339 -1.2455 28 1 4.1621 -0.8918 -0.6521 29 1 3.9841 -1.2705 -3.4926 30 1 2.3459 -1.3018 -4.1879 31 1 2.8201 0.8072 -5.4021 32 1 4.4585 0.8391 -4.7071 33 1 3.7774 0.6487 -7.6486 34 1 5.4154 0.6805 -6.9528 35 1 5.9766 1.0903 -10.5693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338557750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:32 Heat of formation + Delta-G solvation = -127.243392 kcal Electronic energy + Delta-G solvation = -15336.014137 eV Core-core repulsion = 12652.134686 eV Total energy + Delta-G solvation = -2683.879450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49857 -38.77615 -35.05168 -33.49710 -32.74559 -32.25668 -29.19265 -27.17155 -24.71177 -24.08079 -22.98002 -22.07885 -18.71318 -18.34464 -17.78268 -17.30975 -17.06624 -16.55421 -16.20294 -15.44901 -15.26123 -14.98097 -14.76515 -14.44704 -14.00585 -13.77968 -13.27087 -13.04306 -12.96737 -12.86518 -12.70360 -12.56548 -12.45081 -12.09575 -12.02237 -11.89148 -11.32659 -10.98760 -10.94099 -10.59242 -10.35149 -8.82212 -8.35210 -6.48635 0.35015 1.36051 1.40245 1.41563 1.56342 2.33554 2.77708 2.98869 3.16645 3.26346 3.59124 3.80953 3.91461 4.03072 4.04063 4.18770 4.29796 4.30819 4.53521 4.61358 4.64724 4.66703 4.76985 4.83747 4.85562 4.97280 5.06604 5.10634 5.22727 5.51133 5.89731 5.93935 6.42637 6.73380 7.23251 8.77407 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058154 B = 0.003424 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.364202 B = 8175.829059 C = 8426.960658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 H 0.079 0.921 4 O -0.392 6.392 5 C 0.053 3.947 6 C -0.152 4.152 7 C -0.086 4.086 8 H 0.113 0.887 9 S -0.240 6.240 10 C -0.073 4.073 11 C 0.074 3.926 12 O -0.406 6.406 13 C 0.208 3.792 14 C -0.552 4.552 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.046 0.954 33 H -0.011 1.011 34 H -0.011 1.011 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 -4.406 19.513 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.097 0.903 4 O -0.312 6.312 5 C -0.025 4.025 6 C -0.191 4.191 7 C -0.216 4.216 8 H 0.131 0.869 9 S -0.012 6.012 10 C -0.221 4.221 11 C -0.004 4.004 12 O -0.326 6.326 13 C 0.133 3.867 14 C -0.589 4.589 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.908 -3.290 19.606 21.396 hybrid contribution 0.428 -1.126 -1.115 1.641 sum -7.480 -4.416 18.492 20.430 Atomic orbital electron populations 1.22134 0.92786 1.03342 1.03312 1.22444 0.95461 0.95704 0.82064 0.90289 1.88442 1.71380 1.41427 1.29989 1.23522 0.95747 0.88570 0.94620 1.23699 0.97049 1.01540 0.96862 1.24888 1.01292 0.99018 0.96361 0.86852 1.86772 1.83101 1.16262 1.15035 1.23102 1.04449 0.99699 0.94843 1.22015 0.98030 0.92688 0.87690 1.87784 1.82894 1.35025 1.26906 1.19899 0.91896 0.92544 0.82332 1.21417 1.43167 0.93970 1.00355 0.91718 1.26002 0.95015 0.97882 1.00353 1.70075 1.46083 1.15180 1.25574 0.85085 0.78147 0.78366 0.77490 1.18664 1.19610 1.19622 0.91426 0.91107 0.90560 0.90540 0.87923 0.88234 0.89604 0.88681 0.88804 0.93490 0.93528 0.99327 0.99324 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.44 71.98 0.68 -1.77 16 2 C 0.10 1.92 3.79 31.06 0.12 2.03 16 3 H 0.08 1.64 7.77 -2.39 -0.02 1.62 16 4 O -0.39 -7.90 11.02 -148.98 -1.64 -9.54 16 5 C 0.05 0.78 7.78 72.65 0.57 1.34 16 6 C -0.15 -2.50 6.51 32.05 0.21 -2.29 16 7 C -0.09 -1.62 3.05 31.86 0.10 -1.53 16 8 H 0.11 1.92 7.85 -2.39 -0.02 1.90 16 9 S -0.24 -6.00 21.02 -56.49 -1.19 -7.19 16 10 C -0.07 -2.11 6.19 71.98 0.45 -1.66 16 11 C 0.07 2.80 5.95 71.98 0.43 3.23 16 12 O -0.41 -19.89 10.33 -148.98 -1.54 -21.43 16 13 C 0.21 11.81 5.69 71.24 0.41 12.22 16 14 C -0.55 -32.84 9.43 25.60 0.24 -32.60 16 15 H 0.06 3.79 7.81 -2.91 -0.02 3.76 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 18 Si 0.99 43.95 29.54 68.60 2.03 45.98 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.57 8.03 -2.39 -0.02 1.55 16 29 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -65.83 307.26 2.63 -63.20 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.04 Total: 4.74 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 3.65 Total: -20.20 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -3.18 Total: -30.97 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.19 Total: -7.19 kcal Total: -65.83 2.63 -63.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338557750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.047 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds