Wall clock time and date at job start Mon Mar 30 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99850 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47053 * 179.97438 * 11 10 9 13 13 S 1.81406 * 109.46963 * 179.97438 * 12 11 10 14 14 C 1.81395 * 102.99850 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.52065 * 55.12783 * 14 13 12 16 16 C 1.53177 * 109.52361 * 175.31446 * 14 13 12 17 17 C 1.53171 * 109.04076 * 176.88826 * 16 14 13 18 18 C 1.53100 * 109.15986 * 303.02049 * 17 16 14 19 19 O 1.42895 * 109.41687 * 57.60715 * 18 17 16 20 20 C 1.42901 * 114.09844 * 298.84680 * 19 18 17 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.09000 * 109.47029 * 299.99627 * 11 10 9 25 25 H 1.09006 * 109.47421 * 59.99544 * 11 10 9 26 26 H 1.08995 * 109.46933 * 299.99210 * 12 11 10 27 27 H 1.08995 * 109.46912 * 60.00160 * 12 11 10 28 28 H 1.09006 * 109.54372 * 296.75618 * 16 14 13 29 29 H 1.09005 * 109.54589 * 57.01791 * 16 14 13 30 30 H 1.09005 * 109.52743 * 183.11773 * 17 16 14 31 31 H 1.09000 * 109.52500 * 62.92619 * 17 16 14 32 32 H 1.09001 * 109.47864 * 297.62123 * 18 17 16 33 33 H 1.09007 * 109.47623 * 177.58977 * 18 17 16 34 34 H 1.09007 * 109.47558 * 301.16995 * 20 19 18 35 35 H 1.09002 * 109.48242 * 181.14286 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0021 12 6 5.8070 -4.1324 0.0025 13 16 7.6154 -4.2756 0.0032 14 6 7.8826 -6.0697 0.0044 15 1 7.3555 -6.5170 -0.8384 16 6 9.3812 -6.3642 -0.1129 17 6 9.6008 -7.8779 -0.0325 18 6 9.0062 -8.4031 1.2769 19 8 7.6181 -8.0691 1.3360 20 6 7.3544 -6.6648 1.3122 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 5.8159 -2.1703 -0.8874 25 1 5.8146 -2.1708 0.8926 26 1 5.4036 -4.6158 0.8923 27 1 5.4049 -4.6159 -0.8877 28 1 9.7523 -5.9921 -1.0679 29 1 9.9139 -5.8746 0.7024 30 1 10.6691 -8.0930 -0.0596 31 1 9.1093 -8.3626 -0.8761 32 1 9.5258 -7.9483 2.1202 33 1 9.1217 -9.4862 1.3198 34 1 7.8524 -6.1872 2.1562 35 1 6.2798 -6.4955 1.3808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338562586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:11 Heat of formation + Delta-G solvation = -108.533575 kcal Electronic energy + Delta-G solvation = -15388.635155 eV Core-core repulsion = 12705.567023 eV Total energy + Delta-G solvation = -2683.068132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.51635 -37.10352 -34.03305 -32.82028 -31.69472 -31.00802 -27.75433 -25.48189 -24.01780 -22.68587 -21.89394 -20.63664 -17.11400 -16.85696 -16.50741 -16.21469 -15.64007 -15.57106 -15.11657 -14.57424 -14.36266 -14.18968 -13.40352 -13.31592 -13.04719 -12.73084 -12.48037 -11.96899 -11.58011 -11.47182 -11.20039 -11.11238 -10.92669 -10.76646 -10.70425 -10.15897 -9.89903 -9.76351 -9.24312 -8.93850 -8.54264 -7.82849 -6.15083 -4.14969 1.38487 2.38165 3.23111 3.30225 3.31647 3.61015 4.28343 4.32675 4.34459 4.48515 4.56138 4.63520 4.86377 5.00142 5.06333 5.16180 5.21194 5.33250 5.35359 5.42229 5.43991 5.54025 5.61431 5.69353 5.82712 5.96661 6.00512 6.54060 6.81136 6.93624 7.53708 7.91284 8.59299 8.95198 9.43390 10.97787 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058996 B = 0.003577 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.493270 B = 7825.170328 C = 8145.016385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.170 3.830 10 O -0.379 6.379 11 C 0.076 3.924 12 C -0.084 4.084 13 S -0.243 6.243 14 C -0.091 4.091 15 H 0.097 0.903 16 C -0.101 4.101 17 C -0.151 4.151 18 C 0.056 3.944 19 O -0.378 6.378 20 C 0.065 3.935 21 H 0.267 0.733 22 H 0.001 0.999 23 H 0.006 0.994 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.035 -13.745 1.098 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.095 3.905 10 O -0.299 6.299 11 C -0.003 4.003 12 C -0.232 4.232 13 S -0.015 6.015 14 C -0.220 4.220 15 H 0.115 0.885 16 C -0.140 4.140 17 C -0.190 4.190 18 C -0.021 4.021 19 O -0.297 6.297 20 C -0.013 4.013 21 H 0.077 0.923 22 H 0.019 0.981 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.328 -13.073 1.102 25.040 hybrid contribution -0.199 0.467 -0.135 0.525 sum 21.129 -12.607 0.967 24.623 Atomic orbital electron populations 1.69872 1.06065 1.27196 1.50088 1.24763 0.94823 0.98787 0.94520 0.86846 0.80371 0.83669 0.78861 1.19838 1.19037 1.20677 1.20874 0.88115 0.95424 1.51590 0.89902 1.20642 0.96219 0.78998 0.94626 1.87897 1.16633 1.30153 1.95176 1.21868 0.85355 0.92577 1.00468 1.23305 0.92150 1.01507 1.06244 1.86714 1.09147 1.07664 1.97949 1.23828 1.01053 0.94541 1.02594 0.88505 1.21401 0.92673 0.96177 1.03740 1.22213 1.01910 0.95476 0.99435 1.22636 0.82321 1.00807 0.96294 1.87984 1.24350 1.22916 1.94410 1.23025 1.01815 0.81455 0.95031 0.92270 0.98145 0.97673 0.93363 0.93344 0.89157 0.89131 0.90339 0.90763 0.90227 0.90728 0.92940 0.88667 0.91668 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.60 9.99 -34.44 -0.34 -15.95 16 8 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.17 4.36 4.76 36.00 0.17 4.54 16 10 O -0.38 -8.87 10.33 -35.23 -0.36 -9.24 16 11 C 0.08 1.36 5.95 37.16 0.22 1.58 16 12 C -0.08 -1.22 6.01 37.16 0.22 -1.00 16 13 S -0.24 -3.05 21.16 -107.50 -2.27 -5.32 16 14 C -0.09 -0.92 2.85 -26.60 -0.08 -1.00 16 15 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 16 C -0.10 -0.83 5.32 -26.55 -0.14 -0.97 16 17 C -0.15 -1.01 6.14 -26.59 -0.16 -1.18 16 18 C 0.06 0.42 6.84 37.21 0.25 0.68 16 19 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 20 C 0.07 0.67 6.00 37.20 0.22 0.90 16 21 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 23 H 0.01 0.14 7.20 -51.93 -0.37 -0.23 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.27 7.22 -51.93 -0.37 0.89 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.05 7.04 -51.93 -0.37 0.68 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -31.73 298.72 -7.89 -39.61 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.75 Total: -4.68 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 0.27 Total: -10.34 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.74 Total: -13.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.27 Total: -5.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.73 -7.89 -39.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338562586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.921 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds