Wall clock time and date at job start Mon Mar 30 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99850 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47053 * 179.97438 * 11 10 9 13 13 S 1.81406 * 109.46963 * 179.97438 * 12 11 10 14 14 C 1.81395 * 102.99850 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.52065 * 55.12783 * 14 13 12 16 16 C 1.53177 * 109.52361 * 175.31446 * 14 13 12 17 17 C 1.53171 * 109.04076 * 176.88826 * 16 14 13 18 18 C 1.53100 * 109.15986 * 303.02049 * 17 16 14 19 19 O 1.42895 * 109.41687 * 57.60715 * 18 17 16 20 20 C 1.42901 * 114.09844 * 298.84680 * 19 18 17 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.09000 * 109.47029 * 299.99627 * 11 10 9 25 25 H 1.09006 * 109.47421 * 59.99544 * 11 10 9 26 26 H 1.08995 * 109.46933 * 299.99210 * 12 11 10 27 27 H 1.08995 * 109.46912 * 60.00160 * 12 11 10 28 28 H 1.09006 * 109.54372 * 296.75618 * 16 14 13 29 29 H 1.09005 * 109.54589 * 57.01791 * 16 14 13 30 30 H 1.09005 * 109.52743 * 183.11773 * 17 16 14 31 31 H 1.09000 * 109.52500 * 62.92619 * 17 16 14 32 32 H 1.09001 * 109.47864 * 297.62123 * 18 17 16 33 33 H 1.09007 * 109.47623 * 177.58977 * 18 17 16 34 34 H 1.09007 * 109.47558 * 301.16995 * 20 19 18 35 35 H 1.09002 * 109.48242 * 181.14286 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0021 12 6 5.8070 -4.1324 0.0025 13 16 7.6154 -4.2756 0.0032 14 6 7.8826 -6.0697 0.0044 15 1 7.3555 -6.5170 -0.8384 16 6 9.3812 -6.3642 -0.1129 17 6 9.6008 -7.8779 -0.0325 18 6 9.0062 -8.4031 1.2769 19 8 7.6181 -8.0691 1.3360 20 6 7.3544 -6.6648 1.3122 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 5.8159 -2.1703 -0.8874 25 1 5.8146 -2.1708 0.8926 26 1 5.4036 -4.6158 0.8923 27 1 5.4049 -4.6159 -0.8877 28 1 9.7523 -5.9921 -1.0679 29 1 9.9139 -5.8746 0.7024 30 1 10.6691 -8.0930 -0.0596 31 1 9.1093 -8.3626 -0.8761 32 1 9.5258 -7.9483 2.1202 33 1 9.1217 -9.4862 1.3198 34 1 7.8524 -6.1872 2.1562 35 1 6.2798 -6.4955 1.3808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338562586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:11 Heat of formation + Delta-G solvation = -129.477636 kcal Electronic energy + Delta-G solvation = -15389.543358 eV Core-core repulsion = 12705.567023 eV Total energy + Delta-G solvation = -2683.976334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22678 -38.85795 -34.99127 -34.73915 -32.79857 -32.12025 -29.80143 -26.19766 -24.77087 -24.17446 -23.81157 -21.33304 -19.12115 -17.93535 -17.62164 -17.31486 -17.00310 -16.70926 -16.46392 -15.85654 -15.22548 -15.13993 -14.91887 -14.84046 -14.48906 -13.80693 -13.57123 -13.15769 -13.07213 -12.69710 -12.56592 -12.42372 -12.18926 -11.86836 -11.74913 -11.67850 -11.41865 -11.00466 -10.96554 -10.54989 -10.48947 -8.82941 -8.40418 -6.49517 0.37637 1.32722 1.35573 1.36776 1.46674 2.27437 2.92026 2.92394 3.08118 3.56064 3.56564 3.80593 3.90207 3.97479 3.99653 4.14953 4.29597 4.39805 4.48749 4.55667 4.60209 4.64920 4.72074 4.76473 4.83007 4.93715 4.97709 5.05173 5.24247 5.37672 5.85971 6.12842 6.53540 6.63012 7.14795 8.76624 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058996 B = 0.003577 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.493270 B = 7825.170328 C = 8145.016385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.245 1.245 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.031 0.969 9 C 0.180 3.820 10 O -0.405 6.405 11 C 0.071 3.929 12 C -0.082 4.082 13 S -0.241 6.241 14 C -0.084 4.084 15 H 0.092 0.908 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.047 3.953 19 O -0.398 6.398 20 C 0.067 3.933 21 H 0.274 0.726 22 H 0.015 0.985 23 H 0.016 0.984 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.896 -13.165 1.104 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.168 1.168 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.050 0.950 9 C 0.104 3.896 10 O -0.325 6.325 11 C -0.007 4.007 12 C -0.231 4.231 13 S -0.013 6.013 14 C -0.213 4.213 15 H 0.111 0.889 16 C -0.139 4.139 17 C -0.183 4.183 18 C -0.029 4.029 19 O -0.318 6.318 20 C -0.012 4.012 21 H 0.084 0.916 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 24.205 -12.520 1.106 27.273 hybrid contribution -1.079 0.116 -0.129 1.093 sum 23.126 -12.404 0.977 26.260 Atomic orbital electron populations 1.70025 1.08270 1.28939 1.50730 1.25849 0.95826 1.03451 0.93270 0.85603 0.79453 0.77371 0.79911 1.18258 1.16844 1.19649 1.21152 0.90811 0.94021 1.52877 0.95040 1.20374 0.93381 0.80388 0.95457 1.87845 1.20291 1.28998 1.95362 1.22120 0.82294 0.94983 1.01278 1.23166 0.94322 0.99310 1.06256 1.86657 1.06454 1.10208 1.97957 1.23906 1.02630 0.92329 1.02413 0.88913 1.21449 0.90889 0.97422 1.04115 1.22194 1.03340 0.93989 0.98809 1.22897 0.80864 1.01998 0.97106 1.87960 1.26515 1.22759 1.94547 1.22955 1.01322 0.81715 0.95214 0.91647 0.96770 0.96622 0.92475 0.92405 0.89072 0.89366 0.89930 0.90393 0.87800 0.91018 0.92038 0.87086 0.91210 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.01 0.85 5.47 84.65 0.46 1.32 16 3 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.25 -10.23 6.54 99.48 0.65 -9.58 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -33.87 9.99 25.60 0.26 -33.61 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.18 9.12 4.76 71.24 0.34 9.46 16 10 O -0.40 -19.08 10.33 -148.98 -1.54 -20.62 16 11 C 0.07 2.48 5.95 71.98 0.43 2.91 16 12 C -0.08 -2.36 6.01 71.98 0.43 -1.93 16 13 S -0.24 -5.71 21.16 -56.49 -1.20 -6.90 16 14 C -0.08 -1.58 2.85 30.68 0.09 -1.49 16 15 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.10 -1.41 5.32 30.71 0.16 -1.24 16 17 C -0.14 -1.56 6.14 30.68 0.19 -1.37 16 18 C 0.05 0.61 6.84 72.02 0.49 1.10 16 19 O -0.40 -8.06 10.77 -148.98 -1.60 -9.67 16 20 C 0.07 1.31 6.00 72.01 0.43 1.74 16 21 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 22 H 0.01 0.69 7.57 -2.39 -0.02 0.68 16 23 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.09 2.56 7.22 -2.39 -0.02 2.55 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.09 1.86 7.04 -2.39 -0.02 1.84 16 Total: -1.00 -69.62 298.72 2.12 -67.51 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.99 Total: 6.67 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 3.28 Total: -23.12 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.30 Total: -59.06 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -3.14 Total: -30.28 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.20 Total: -6.90 kcal Total: -69.62 2.12 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338562586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.971 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds