Wall clock time and date at job start Mon Mar 30 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48499 * 109.46897 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.47028 * 30.00102 * 3 2 1 6 6 H 1.48495 * 109.46818 * 149.99965 * 3 2 1 7 7 C 1.37883 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99649 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99662 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 S 1.81409 * 109.46814 * 180.02562 * 12 11 10 14 14 C 1.81395 * 102.99786 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.52669 * 305.00107 * 14 13 12 16 16 C 1.53182 * 109.51980 * 184.87552 * 14 13 12 17 17 C 1.53195 * 109.03158 * 183.17532 * 16 14 13 18 18 C 1.53096 * 109.21224 * 56.88570 * 17 16 14 19 19 O 1.42904 * 109.41649 * 302.42550 * 18 17 16 20 20 C 1.42908 * 114.09769 * 61.15434 * 19 18 17 21 21 H 0.96993 * 120.00083 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 23 23 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 24 24 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 25 25 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 26 26 H 1.09000 * 109.47486 * 300.00062 * 12 11 10 27 27 H 1.09001 * 109.47362 * 60.00784 * 12 11 10 28 28 H 1.08999 * 109.54266 * 302.97774 * 16 14 13 29 29 H 1.08990 * 109.54346 * 63.25033 * 16 14 13 30 30 H 1.08995 * 109.47012 * 296.98155 * 17 16 14 31 31 H 1.08997 * 109.52062 * 176.82382 * 17 16 14 32 32 H 1.08994 * 109.47680 * 182.44003 * 18 17 16 33 33 H 1.09001 * 109.48729 * 62.41122 * 18 17 16 34 34 H 1.08997 * 109.47950 * 178.85950 * 20 19 18 35 35 H 1.09006 * 109.48795 * 58.83773 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6541 -0.0010 12 6 5.8069 -4.1324 -0.0002 13 16 7.6153 -4.2756 -0.0008 14 6 7.8825 -6.0698 -0.0004 15 1 7.3536 -6.5167 0.8414 16 6 9.3808 -6.3641 0.1218 17 6 9.6007 -7.8781 0.0411 18 6 9.0089 -8.4040 -1.2692 19 8 7.6208 -8.0699 -1.3315 20 6 7.3571 -6.6656 -1.3091 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6796 0.8894 23 1 3.8745 -0.6808 -0.8905 24 1 5.8145 -2.1709 -0.8915 25 1 5.8158 -2.1703 0.8885 26 1 5.4049 -4.6153 0.8905 27 1 5.4035 -4.6167 -0.8895 28 1 9.9160 -5.8750 -0.6921 29 1 9.7487 -5.9918 1.0777 30 1 9.1073 -8.3623 0.8838 31 1 10.6688 -8.0930 0.0706 32 1 9.1244 -9.4870 -1.3114 33 1 9.5302 -7.9497 -2.1119 34 1 6.2827 -6.4963 -1.3800 35 1 7.8566 -6.1883 -2.1523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338562587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:14 Heat of formation + Delta-G solvation = -108.526150 kcal Electronic energy + Delta-G solvation = -15388.091401 eV Core-core repulsion = 12705.023591 eV Total energy + Delta-G solvation = -2683.067810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51332 -37.10301 -34.03233 -32.82058 -31.69387 -31.00830 -27.75419 -25.48468 -24.01843 -22.68600 -21.89384 -20.63432 -17.11334 -16.85738 -16.50777 -16.21390 -15.64288 -15.56862 -15.11603 -14.57450 -14.36234 -14.19076 -13.37940 -13.34331 -13.04435 -12.72800 -12.47947 -11.98004 -11.58082 -11.44918 -11.21452 -11.10824 -10.92683 -10.78950 -10.68524 -10.15674 -9.90092 -9.76438 -9.24311 -8.93836 -8.54274 -7.82862 -6.15079 -4.14955 1.38489 2.38165 3.23120 3.30215 3.31685 3.60984 4.28317 4.32692 4.34508 4.48339 4.56237 4.63545 4.86388 5.00142 5.06316 5.16195 5.21173 5.33249 5.35354 5.42304 5.44000 5.54090 5.61432 5.69402 5.82689 5.96683 6.00503 6.54095 6.81060 6.93661 7.53739 7.91293 8.59320 8.95232 9.43402 10.97812 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.059009 B = 0.003577 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.389320 B = 7826.422361 C = 8145.905698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.170 3.830 10 O -0.379 6.379 11 C 0.076 3.924 12 C -0.084 4.084 13 S -0.243 6.243 14 C -0.091 4.091 15 H 0.097 0.903 16 C -0.101 4.101 17 C -0.151 4.151 18 C 0.056 3.944 19 O -0.378 6.378 20 C 0.066 3.934 21 H 0.267 0.733 22 H 0.005 0.995 23 H 0.001 0.999 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.037 -13.745 -1.052 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.095 3.905 10 O -0.299 6.299 11 C -0.003 4.003 12 C -0.232 4.232 13 S -0.015 6.015 14 C -0.220 4.220 15 H 0.115 0.885 16 C -0.140 4.140 17 C -0.190 4.190 18 C -0.020 4.020 19 O -0.297 6.297 20 C -0.013 4.013 21 H 0.077 0.923 22 H 0.023 0.977 23 H 0.019 0.981 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.330 -13.074 -1.051 25.040 hybrid contribution -0.199 0.467 0.102 0.518 sum 21.131 -12.607 -0.949 24.624 Atomic orbital electron populations 1.69870 1.06067 1.27198 1.50085 1.24763 0.94822 0.98786 0.94519 0.86844 0.80373 0.83669 0.78862 1.19830 1.20681 1.19038 1.20874 0.88115 0.95423 1.51594 0.89902 1.20641 0.96220 0.79000 0.94625 1.87898 1.16633 1.30153 1.95177 1.21868 0.85354 0.92577 1.00469 1.23307 0.92147 1.01505 1.06245 1.86715 1.09149 1.07663 1.97949 1.23829 1.01066 0.94538 1.02587 0.88510 1.21403 0.92676 0.96176 1.03732 1.22214 1.01918 0.95479 0.99426 1.22632 0.82329 1.00806 0.96282 1.87987 1.24366 1.22913 1.94398 1.23024 1.01826 0.81447 0.95020 0.92270 0.97683 0.98138 0.93338 0.93365 0.89130 0.89159 0.90776 0.90326 0.90736 0.90227 0.88665 0.92940 0.88383 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.86 16 7 C -0.52 -15.61 9.99 -34.44 -0.34 -15.95 16 8 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.17 4.36 4.76 36.01 0.17 4.54 16 10 O -0.38 -8.87 10.33 -35.23 -0.36 -9.24 16 11 C 0.08 1.36 5.95 37.16 0.22 1.58 16 12 C -0.08 -1.22 6.02 37.16 0.22 -1.00 16 13 S -0.24 -3.05 21.16 -107.50 -2.27 -5.32 16 14 C -0.09 -0.92 2.85 -26.59 -0.08 -1.00 16 15 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 16 C -0.10 -0.83 5.33 -26.54 -0.14 -0.97 16 17 C -0.15 -1.01 6.13 -26.58 -0.16 -1.18 16 18 C 0.06 0.42 6.84 37.21 0.25 0.68 16 19 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 20 C 0.07 0.67 6.01 37.20 0.22 0.90 16 21 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.01 0.14 7.20 -51.93 -0.37 -0.24 16 23 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.31 8.14 -51.92 -0.42 0.88 16 27 H 0.09 1.27 7.22 -51.92 -0.38 0.89 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 1.05 7.04 -51.93 -0.37 0.68 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -31.73 298.73 -7.89 -39.61 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.75 Total: -4.68 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 0.27 Total: -10.34 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.74 Total: -13.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.27 Total: -5.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.73 -7.89 -39.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338562587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.912 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds