Wall clock time and date at job start Mon Mar 30 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48499 * 109.46897 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.47028 * 30.00102 * 3 2 1 6 6 H 1.48495 * 109.46818 * 149.99965 * 3 2 1 7 7 C 1.37883 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99649 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99662 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 S 1.81409 * 109.46814 * 180.02562 * 12 11 10 14 14 C 1.81395 * 102.99786 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.52669 * 305.00107 * 14 13 12 16 16 C 1.53182 * 109.51980 * 184.87552 * 14 13 12 17 17 C 1.53195 * 109.03158 * 183.17532 * 16 14 13 18 18 C 1.53096 * 109.21224 * 56.88570 * 17 16 14 19 19 O 1.42904 * 109.41649 * 302.42550 * 18 17 16 20 20 C 1.42908 * 114.09769 * 61.15434 * 19 18 17 21 21 H 0.96993 * 120.00083 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 23 23 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 24 24 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 25 25 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 26 26 H 1.09000 * 109.47486 * 300.00062 * 12 11 10 27 27 H 1.09001 * 109.47362 * 60.00784 * 12 11 10 28 28 H 1.08999 * 109.54266 * 302.97774 * 16 14 13 29 29 H 1.08990 * 109.54346 * 63.25033 * 16 14 13 30 30 H 1.08995 * 109.47012 * 296.98155 * 17 16 14 31 31 H 1.08997 * 109.52062 * 176.82382 * 17 16 14 32 32 H 1.08994 * 109.47680 * 182.44003 * 18 17 16 33 33 H 1.09001 * 109.48729 * 62.41122 * 18 17 16 34 34 H 1.08997 * 109.47950 * 178.85950 * 20 19 18 35 35 H 1.09006 * 109.48795 * 58.83773 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6541 -0.0010 12 6 5.8069 -4.1324 -0.0002 13 16 7.6153 -4.2756 -0.0008 14 6 7.8825 -6.0698 -0.0004 15 1 7.3536 -6.5167 0.8414 16 6 9.3808 -6.3641 0.1218 17 6 9.6007 -7.8781 0.0411 18 6 9.0089 -8.4040 -1.2692 19 8 7.6208 -8.0699 -1.3315 20 6 7.3571 -6.6656 -1.3091 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6796 0.8894 23 1 3.8745 -0.6808 -0.8905 24 1 5.8145 -2.1709 -0.8915 25 1 5.8158 -2.1703 0.8885 26 1 5.4049 -4.6153 0.8905 27 1 5.4035 -4.6167 -0.8895 28 1 9.9160 -5.8750 -0.6921 29 1 9.7487 -5.9918 1.0777 30 1 9.1073 -8.3623 0.8838 31 1 10.6688 -8.0930 0.0706 32 1 9.1244 -9.4870 -1.3114 33 1 9.5302 -7.9497 -2.1119 34 1 6.2827 -6.4963 -1.3800 35 1 7.8566 -6.1883 -2.1523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338562587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:14 Heat of formation + Delta-G solvation = -129.472004 kcal Electronic energy + Delta-G solvation = -15388.999681 eV Core-core repulsion = 12705.023591 eV Total energy + Delta-G solvation = -2683.976090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22352 -38.85758 -34.99173 -34.73836 -32.79782 -32.12023 -29.80137 -26.20010 -24.77156 -24.17432 -23.81170 -21.33074 -19.12131 -17.93586 -17.61983 -17.31449 -17.00574 -16.70491 -16.46709 -15.85596 -15.22456 -15.14039 -14.89038 -14.87271 -14.48583 -13.80352 -13.57165 -13.17962 -13.05919 -12.67450 -12.55502 -12.45667 -12.18854 -11.86115 -11.75020 -11.67884 -11.41938 -11.00607 -10.96380 -10.55116 -10.48955 -8.82957 -8.40418 -6.49510 0.37633 1.32708 1.35604 1.36774 1.46693 2.27456 2.92040 2.92399 3.08133 3.56182 3.56462 3.80568 3.90062 3.97471 3.99747 4.14992 4.29580 4.39828 4.48782 4.55653 4.60132 4.65089 4.72032 4.76448 4.83129 4.93729 4.97766 5.05222 5.24222 5.37695 5.85984 6.12804 6.53556 6.63018 7.14799 8.76644 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.059009 B = 0.003577 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.389320 B = 7826.422361 C = 8145.905698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.551 4.551 8 H 0.031 0.969 9 C 0.180 3.820 10 O -0.405 6.405 11 C 0.071 3.929 12 C -0.082 4.082 13 S -0.241 6.241 14 C -0.084 4.084 15 H 0.092 0.908 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.047 3.953 19 O -0.399 6.399 20 C 0.067 3.933 21 H 0.274 0.726 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.897 -13.164 -1.099 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.589 4.589 8 H 0.050 0.950 9 C 0.104 3.896 10 O -0.325 6.325 11 C -0.007 4.007 12 C -0.231 4.231 13 S -0.013 6.013 14 C -0.213 4.213 15 H 0.111 0.889 16 C -0.139 4.139 17 C -0.183 4.183 18 C -0.029 4.029 19 O -0.318 6.318 20 C -0.012 4.012 21 H 0.084 0.916 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.206 -12.519 -1.098 27.273 hybrid contribution -1.079 0.116 0.109 1.091 sum 23.127 -12.403 -0.989 26.261 Atomic orbital electron populations 1.70023 1.08272 1.28942 1.50726 1.25849 0.95825 1.03451 0.93268 0.85602 0.79438 0.77367 0.79929 1.18212 1.19664 1.16875 1.21152 0.90810 0.94020 1.52883 0.95040 1.20372 0.93382 0.80389 0.95456 1.87846 1.20292 1.28997 1.95363 1.22121 0.82292 0.94982 1.01279 1.23168 0.94320 0.99308 1.06256 1.86657 1.06456 1.10207 1.97957 1.23907 1.02641 0.92327 1.02409 0.88928 1.21451 0.90894 0.97421 1.04105 1.22195 1.03347 0.93991 0.98801 1.22894 0.80874 1.01996 0.97092 1.87963 1.26529 1.22758 1.94536 1.22954 1.01337 0.81706 0.95200 0.91646 0.96685 0.96711 0.92311 0.92565 0.89388 0.89052 0.90400 0.89923 0.91031 0.87801 0.87086 0.92033 0.89466 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.01 0.86 5.47 84.66 0.46 1.32 16 3 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.25 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.55 -33.88 9.99 25.60 0.26 -33.62 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.18 9.12 4.76 71.24 0.34 9.46 16 10 O -0.40 -19.08 10.33 -148.98 -1.54 -20.62 16 11 C 0.07 2.48 5.95 71.98 0.43 2.91 16 12 C -0.08 -2.36 6.02 71.98 0.43 -1.93 16 13 S -0.24 -5.71 21.16 -56.49 -1.20 -6.90 16 14 C -0.08 -1.58 2.85 30.68 0.09 -1.50 16 15 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.10 -1.41 5.33 30.72 0.16 -1.24 16 17 C -0.14 -1.56 6.13 30.69 0.19 -1.37 16 18 C 0.05 0.61 6.84 72.01 0.49 1.10 16 19 O -0.40 -8.06 10.77 -148.98 -1.60 -9.66 16 20 C 0.07 1.31 6.01 72.01 0.43 1.74 16 21 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 22 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 23 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.09 2.57 7.22 -2.39 -0.02 2.55 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.86 7.04 -2.39 -0.02 1.84 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -69.63 298.73 2.12 -67.51 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.99 Total: 6.67 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 3.28 Total: -23.13 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.30 Total: -59.06 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -3.14 Total: -30.28 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.20 Total: -6.90 kcal Total: -69.63 2.12 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338562587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.960 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds