Wall clock time and date at job start Mon Mar 30 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00126 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99785 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00028 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99804 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00038 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47194 * 34.71875 * 12 11 9 14 14 C 1.50700 * 109.47204 * 154.72097 * 12 11 9 15 15 C 1.38673 * 120.41626 * 219.99673 * 14 12 11 16 16 C 1.38626 * 118.41889 * 180.02562 * 15 14 12 17 17 C 1.38228 * 119.15826 * 0.02562 * 16 15 14 18 18 N 1.31855 * 120.76877 * 0.02562 * 17 16 15 19 19 C 1.31883 * 121.72223 * 359.70550 * 18 17 16 20 20 C 1.52997 * 109.46691 * 274.72265 * 12 11 9 21 21 C 1.53000 * 117.49897 * 128.74883 * 20 12 11 22 22 C 1.53006 * 117.50330 * 60.08664 * 20 12 11 23 23 H 0.97000 * 119.99487 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00161 * 359.71914 * 11 9 7 25 25 H 1.07993 * 120.78967 * 359.97438 * 15 14 12 26 26 H 1.08002 * 120.41862 * 180.02562 * 16 15 14 27 27 H 1.08008 * 119.61727 * 179.97438 * 17 16 15 28 28 H 1.07999 * 119.62010 * 180.30897 * 19 18 17 29 29 H 1.09000 * 115.55214 * 274.41010 * 20 12 11 30 30 H 1.09000 * 117.50268 * 359.97438 * 21 20 12 31 31 H 1.09007 * 117.50040 * 145.01782 * 21 20 12 32 32 H 1.08994 * 117.49645 * 214.98137 * 22 20 12 33 33 H 1.09001 * 117.49573 * 359.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9165 0.0022 13 1 0.3035 -4.8092 -0.5836 14 6 2.0782 -5.9943 -0.6035 15 6 1.5245 -6.9426 -1.4504 16 6 2.3552 -7.9158 -1.9839 17 6 3.6980 -7.9088 -1.6560 18 7 4.1898 -6.9918 -0.8462 19 6 3.4304 -6.0482 -0.3244 20 6 0.8581 -5.2977 1.4399 21 6 -0.6010 -5.6518 1.7341 22 6 -0.0197 -4.3256 2.2307 23 1 -0.4849 0.8401 -0.0004 24 1 2.9190 -3.6477 -0.0018 25 1 0.4712 -6.9240 -1.6879 26 1 1.9582 -8.6698 -2.6474 27 1 4.3518 -8.6638 -2.0671 28 1 3.8699 -5.3109 0.3310 29 1 1.6280 -5.8406 1.9882 30 1 -1.3057 -5.6128 0.9035 31 1 -0.7909 -6.4273 2.4762 32 1 0.1726 -4.2292 3.2992 33 1 -0.3416 -3.4142 1.7268 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357630940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:03 Heat of formation + Delta-G solvation = 20.031598 kcal Electronic energy + Delta-G solvation = -17420.166841 eV Core-core repulsion = 14639.522514 eV Total energy + Delta-G solvation = -2780.644328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19634 -38.06034 -35.94215 -33.55186 -32.49890 -32.12432 -30.61853 -27.05957 -25.37534 -23.48759 -22.26652 -21.66788 -20.46883 -19.21806 -17.63239 -16.77461 -16.03866 -15.60784 -15.14562 -14.91995 -14.28303 -14.07442 -13.77367 -13.47309 -12.93628 -12.70205 -12.20115 -11.94665 -11.56814 -11.28188 -11.16085 -10.99923 -10.64734 -10.49587 -10.26012 -9.82272 -9.71926 -9.56863 -9.26466 -8.88585 -8.80459 -7.65838 -7.50671 -6.21987 -4.66991 1.22516 1.40018 3.12901 3.20394 3.23437 3.91272 4.07311 4.30069 4.52354 4.55343 4.76304 4.94080 5.06701 5.15839 5.27181 5.38925 5.58013 5.65483 5.68644 5.76265 5.88123 5.95432 6.12662 6.19119 6.21860 6.52498 6.59451 6.69269 6.80518 7.23709 7.41361 7.86892 8.02366 8.09264 8.29580 9.00072 9.47598 10.55803 10.74078 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.006503 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.319563 B = 4304.517773 C = 4975.107026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.560 3.440 10 O -0.575 6.575 11 N -0.757 5.757 12 C 0.226 3.774 13 H 0.087 0.913 14 C -0.119 4.119 15 C -0.068 4.068 16 C -0.173 4.173 17 C 0.084 3.916 18 N -0.485 5.485 19 C 0.104 3.896 20 C -0.161 4.161 21 C -0.182 4.182 22 C -0.171 4.171 23 H 0.268 0.732 24 H 0.379 0.621 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -11.931 -0.834 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.365 3.635 10 O -0.459 6.459 11 N -0.412 5.412 12 C 0.119 3.881 13 H 0.105 0.895 14 C -0.121 4.121 15 C -0.095 4.095 16 C -0.193 4.193 17 C -0.073 4.073 18 N -0.193 5.193 19 C -0.053 4.053 20 C -0.181 4.181 21 C -0.220 4.220 22 C -0.207 4.207 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.315 -11.820 -0.634 12.292 hybrid contribution 0.063 0.682 -0.176 0.707 sum 3.378 -11.138 -0.809 11.667 Atomic orbital electron populations 1.70006 1.06972 1.27278 1.35231 1.25673 0.94612 1.00200 0.92573 0.86397 0.80223 0.81479 0.78830 1.19792 1.20465 1.18904 1.20878 0.93626 0.89346 1.54201 0.91488 1.18149 0.87230 0.82192 0.75935 1.90520 1.13923 1.86556 1.54882 1.46288 1.08418 1.04160 1.82329 1.18897 0.94317 0.82409 0.92445 0.89518 1.21195 0.95972 0.97509 0.97454 1.21495 1.00496 0.93183 0.94293 1.22084 0.95262 1.00083 1.01847 1.22691 0.93443 0.96517 0.94670 1.67683 1.39579 1.03135 1.08912 1.22598 0.90210 0.95439 0.97034 1.22610 0.93214 1.04897 0.97383 1.22886 0.95822 0.99863 1.03442 1.23404 1.02145 0.96177 0.99017 0.92115 0.78839 0.84831 0.85035 0.83168 0.82784 0.89110 0.89137 0.90003 0.90406 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.22 11.83 55.55 0.66 -21.56 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.85 29.56 -169.99 -5.02 14.82 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.54 -14.89 9.54 -35.63 -0.34 -15.23 16 8 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 9 C 0.56 15.04 7.08 -12.99 -0.09 14.95 16 10 O -0.58 -17.15 12.07 5.20 0.06 -17.08 16 11 N -0.76 -16.24 5.00 -56.34 -0.28 -16.52 16 12 C 0.23 4.21 2.49 -69.08 -0.17 4.04 16 13 H 0.09 1.81 7.22 -51.93 -0.37 1.44 16 14 C -0.12 -1.87 4.95 -104.48 -0.52 -2.39 16 15 C -0.07 -0.93 9.82 -39.28 -0.39 -1.31 16 16 C -0.17 -2.01 10.11 -39.44 -0.40 -2.41 16 17 C 0.08 1.04 11.18 -17.55 -0.20 0.84 16 18 N -0.48 -7.26 10.36 -13.25 -0.14 -7.40 16 19 C 0.10 1.60 10.23 -17.55 -0.18 1.42 16 20 C -0.16 -2.84 5.34 -90.62 -0.48 -3.32 16 21 C -0.18 -3.01 10.18 -26.69 -0.27 -3.29 16 22 C -0.17 -3.35 9.74 -26.69 -0.26 -3.61 16 23 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 24 H 0.38 7.35 6.87 -40.82 -0.28 7.07 16 25 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.15 2.25 6.91 -52.49 -0.36 1.89 16 29 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 30 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 31 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.14 3.33 5.04 -51.93 -0.26 3.07 16 LS Contribution 285.11 15.07 4.30 4.30 Total: -1.00 -31.90 285.11 -7.60 -39.50 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -3.78 Total: 11.91 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.39 Total: -7.96 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.24 Total: -45.48 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.06 Total: -17.08 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.90 -7.60 -39.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357630940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.532 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds