Wall clock time and date at job start Mon Mar 30 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00126 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99785 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00028 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99804 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00038 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47194 * 34.71875 * 12 11 9 14 14 C 1.50700 * 109.47204 * 154.72097 * 12 11 9 15 15 C 1.38673 * 120.41626 * 219.99673 * 14 12 11 16 16 C 1.38626 * 118.41889 * 180.02562 * 15 14 12 17 17 C 1.38228 * 119.15826 * 0.02562 * 16 15 14 18 18 N 1.31855 * 120.76877 * 0.02562 * 17 16 15 19 19 C 1.31883 * 121.72223 * 359.70550 * 18 17 16 20 20 C 1.52997 * 109.46691 * 274.72265 * 12 11 9 21 21 C 1.53000 * 117.49897 * 128.74883 * 20 12 11 22 22 C 1.53006 * 117.50330 * 60.08664 * 20 12 11 23 23 H 0.97000 * 119.99487 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00161 * 359.71914 * 11 9 7 25 25 H 1.07993 * 120.78967 * 359.97438 * 15 14 12 26 26 H 1.08002 * 120.41862 * 180.02562 * 16 15 14 27 27 H 1.08008 * 119.61727 * 179.97438 * 17 16 15 28 28 H 1.07999 * 119.62010 * 180.30897 * 19 18 17 29 29 H 1.09000 * 115.55214 * 274.41010 * 20 12 11 30 30 H 1.09000 * 117.50268 * 359.97438 * 21 20 12 31 31 H 1.09007 * 117.50040 * 145.01782 * 21 20 12 32 32 H 1.08994 * 117.49645 * 214.98137 * 22 20 12 33 33 H 1.09001 * 117.49573 * 359.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9165 0.0022 13 1 0.3035 -4.8092 -0.5836 14 6 2.0782 -5.9943 -0.6035 15 6 1.5245 -6.9426 -1.4504 16 6 2.3552 -7.9158 -1.9839 17 6 3.6980 -7.9088 -1.6560 18 7 4.1898 -6.9918 -0.8462 19 6 3.4304 -6.0482 -0.3244 20 6 0.8581 -5.2977 1.4399 21 6 -0.6010 -5.6518 1.7341 22 6 -0.0197 -4.3256 2.2307 23 1 -0.4849 0.8401 -0.0004 24 1 2.9190 -3.6477 -0.0018 25 1 0.4712 -6.9240 -1.6879 26 1 1.9582 -8.6698 -2.6474 27 1 4.3518 -8.6638 -2.0671 28 1 3.8699 -5.3109 0.3310 29 1 1.6280 -5.8406 1.9882 30 1 -1.3057 -5.6128 0.9035 31 1 -0.7909 -6.4273 2.4762 32 1 0.1726 -4.2292 3.2992 33 1 -0.3416 -3.4142 1.7268 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357630940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:02 Heat of formation + Delta-G solvation = -1.497650 kcal Electronic energy + Delta-G solvation = -17421.100420 eV Core-core repulsion = 14639.522514 eV Total energy + Delta-G solvation = -2781.577906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37285 -39.70576 -37.69784 -35.13756 -34.49328 -33.33928 -32.00776 -28.84472 -27.06316 -24.58902 -23.45311 -23.12746 -22.24068 -20.86825 -19.36392 -18.01564 -17.56252 -17.07652 -16.78686 -16.40888 -15.73362 -15.68903 -15.15224 -14.67690 -14.46354 -13.98507 -13.92126 -13.48798 -13.18349 -12.87071 -12.71218 -12.61539 -12.56880 -12.20648 -12.00939 -11.22682 -11.13649 -10.90757 -10.70899 -10.37847 -9.97572 -9.72472 -9.37182 -8.26382 -6.81782 0.16200 0.33830 1.40386 1.40924 1.55689 2.24618 2.49458 2.73426 2.90091 3.27226 3.47473 3.63659 3.76115 3.97712 4.02279 4.11137 4.17415 4.24124 4.30350 4.39403 4.63928 4.77455 4.80084 4.88762 5.06350 5.18078 5.26868 5.33795 5.37144 5.55201 5.77347 5.92697 6.22779 6.30502 6.90421 7.01943 7.55881 8.53222 8.70930 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.006503 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.319563 B = 4304.517773 C = 4975.107026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.549 3.451 10 O -0.613 6.613 11 N -0.747 5.747 12 C 0.231 3.769 13 H 0.057 0.943 14 C -0.136 4.136 15 C -0.075 4.075 16 C -0.159 4.159 17 C 0.085 3.915 18 N -0.504 5.504 19 C 0.094 3.906 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.199 4.199 23 H 0.273 0.727 24 H 0.389 0.611 25 H 0.144 0.856 26 H 0.172 0.828 27 H 0.187 0.813 28 H 0.152 0.848 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -13.615 -1.319 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.181 4.181 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.612 4.612 8 H 0.099 0.901 9 C 0.353 3.647 10 O -0.499 6.499 11 N -0.401 5.401 12 C 0.125 3.875 13 H 0.075 0.925 14 C -0.138 4.138 15 C -0.102 4.102 16 C -0.178 4.178 17 C -0.072 4.072 18 N -0.213 5.213 19 C -0.062 4.062 20 C -0.174 4.174 21 C -0.193 4.193 22 C -0.236 4.236 23 H 0.083 0.917 24 H 0.223 0.777 25 H 0.162 0.838 26 H 0.189 0.811 27 H 0.204 0.796 28 H 0.169 0.831 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.109 0.891 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.889 -13.543 -1.116 14.442 hybrid contribution -0.417 1.053 -0.084 1.136 sum 4.471 -12.491 -1.200 13.321 Atomic orbital electron populations 1.70162 1.09187 1.28718 1.36576 1.26813 0.95471 1.04471 0.91334 0.85126 0.78861 0.75726 0.79269 1.18852 1.19794 1.17554 1.21401 0.94531 0.90387 1.54851 0.90132 1.18368 0.86938 0.83740 0.75668 1.90495 1.15530 1.87526 1.56367 1.45977 1.08890 1.04218 1.81025 1.18846 0.93484 0.82053 0.93115 0.92523 1.20902 0.95851 0.97728 0.99330 1.21748 1.01532 0.93150 0.93726 1.22470 0.94600 0.99689 1.01053 1.23379 0.94497 0.96107 0.93245 1.67725 1.39876 1.03752 1.09946 1.22533 0.90032 0.96023 0.97626 1.22628 0.94425 1.03931 0.96460 1.22951 0.94682 0.98285 1.03351 1.23159 1.05276 0.95661 0.99480 0.91704 0.77657 0.83795 0.81102 0.79624 0.83098 0.87203 0.89744 0.86509 0.89138 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.23 11.83 21.84 0.26 -48.97 16 2 C 0.03 1.91 5.50 85.30 0.47 2.38 16 3 Si 0.99 41.12 29.56 68.60 2.03 43.15 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.58 -32.37 9.54 24.83 0.24 -32.13 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 C 0.55 30.82 7.08 86.36 0.61 31.44 16 10 O -0.61 -38.73 12.07 -4.31 -0.05 -38.79 16 11 N -0.75 -33.17 5.00 -450.39 -2.25 -35.42 16 12 C 0.23 8.81 2.49 44.24 0.11 8.92 16 13 H 0.06 2.49 7.22 -2.39 -0.02 2.47 16 14 C -0.14 -4.17 4.95 -19.77 -0.10 -4.27 16 15 C -0.08 -1.90 9.82 22.47 0.22 -1.68 16 16 C -0.16 -3.09 10.11 22.36 0.23 -2.86 16 17 C 0.08 1.79 11.18 84.69 0.95 2.74 16 18 N -0.50 -14.04 10.36 -195.84 -2.03 -16.07 16 19 C 0.09 2.81 10.23 84.67 0.87 3.68 16 20 C -0.15 -5.45 5.34 -10.79 -0.06 -5.51 16 21 C -0.16 -5.03 10.18 30.62 0.31 -4.71 16 22 C -0.20 -8.04 9.74 30.62 0.30 -7.75 16 23 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 24 H 0.39 15.49 6.87 -92.70 -0.64 14.85 16 25 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 26 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 27 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.15 4.40 6.91 -2.91 -0.02 4.38 16 29 H 0.11 3.46 8.11 -2.39 -0.02 3.44 16 30 H 0.08 2.83 8.05 -2.39 -0.02 2.81 16 31 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.09 4.48 5.04 -2.39 -0.01 4.46 16 Total: -1.00 -72.91 285.11 2.59 -70.32 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.50 Total: 35.52 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.14 Total: -9.74 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.02 Total: -100.47 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.05 Total: -38.79 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -72.91 2.59 -70.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357630940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.822 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds