Wall clock time and date at job start Mon Mar 30 2020 04:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48502 * 109.47096 * 239.99499 * 3 2 1 5 5 H 1.48497 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47449 * 119.99557 * 3 2 1 7 7 C 1.40054 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99917 * 0.02562 * 7 2 1 10 10 O 1.21697 * 120.00071 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00155 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00276 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.46618 * 325.00159 * 12 11 9 14 14 C 1.50700 * 109.46780 * 204.99995 * 12 11 9 15 15 C 1.38677 * 120.41537 * 140.26447 * 14 12 11 16 16 C 1.38625 * 118.42126 * 180.22222 * 15 14 12 17 17 C 1.38223 * 119.15978 * 359.46985 * 16 15 14 18 18 N 1.31856 * 120.76567 * 0.30777 * 17 16 15 19 19 C 1.31884 * 121.72562 * 359.97275 * 18 17 16 20 20 C 1.53004 * 109.47242 * 85.00028 * 12 11 9 21 21 C 1.53000 * 117.49703 * 8.74763 * 20 12 11 22 22 C 1.53000 * 117.49753 * 300.08729 * 20 12 11 23 23 H 0.97001 * 119.99699 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99850 * 0.02562 * 11 9 7 25 25 H 1.08003 * 120.78603 * 359.97006 * 15 14 12 26 26 H 1.08002 * 120.42343 * 179.75479 * 16 15 14 27 27 H 1.08005 * 119.61951 * 180.28273 * 17 16 15 28 28 H 1.07998 * 119.61861 * 180.02562 * 19 18 17 29 29 H 1.08996 * 115.54966 * 154.41515 * 20 12 11 30 30 H 1.09003 * 117.50133 * 359.97438 * 21 20 12 31 31 H 1.08997 * 117.49976 * 145.02033 * 21 20 12 32 32 H 1.08995 * 117.49929 * 214.97371 * 22 20 12 33 33 H 1.09001 * 117.49865 * 359.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0580 -2.4805 0.0005 11 7 1.9488 -3.6477 0.0005 12 6 1.2162 -4.9164 0.0000 13 1 0.3053 -4.8102 0.5891 14 6 2.0800 -5.9954 0.6005 15 6 1.5283 -6.9487 1.4432 16 6 2.3618 -7.9196 1.9763 17 6 3.7034 -7.9121 1.6438 18 7 4.1928 -6.9926 0.8353 19 6 3.4307 -6.0507 0.3142 20 6 0.8529 -5.2950 -1.4373 21 6 1.4620 -4.4577 -2.5638 22 6 -0.0243 -4.3194 -2.2245 23 1 -0.4850 0.8401 -0.0004 24 1 2.9187 -3.6478 0.0009 25 1 0.4751 -6.9325 1.6817 26 1 1.9670 -8.6752 2.6394 27 1 4.3586 -8.6679 2.0513 28 1 3.8673 -5.3146 -0.3445 29 1 0.7117 -6.3599 -1.6216 30 1 2.1212 -3.6370 -2.2810 31 1 1.7211 -4.9718 -3.4893 32 1 -0.7423 -4.7425 -2.9270 33 1 -0.3429 -3.4081 -1.7183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357630947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:07 Heat of formation + Delta-G solvation = 24.085362 kcal Electronic energy + Delta-G solvation = -17539.191257 eV Core-core repulsion = 14758.722713 eV Total energy + Delta-G solvation = -2780.468543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21437 -38.25018 -35.74241 -33.39001 -32.51353 -32.09997 -30.64617 -27.12169 -25.48758 -23.46983 -22.29177 -21.55452 -20.51175 -18.90488 -17.63721 -16.79328 -16.09300 -15.66846 -15.22369 -14.90947 -14.30712 -14.04333 -13.71377 -13.27872 -12.93306 -12.82085 -12.18073 -11.79564 -11.64819 -11.28247 -11.09717 -10.99777 -10.66158 -10.50096 -10.27262 -9.83255 -9.58957 -9.55781 -9.14070 -8.89248 -8.79341 -7.68554 -7.51428 -6.23050 -4.68774 1.23606 1.40149 3.14072 3.19504 3.20976 3.92782 4.07369 4.38444 4.51513 4.56024 4.82172 4.94761 4.99514 5.13740 5.24746 5.46212 5.60654 5.68404 5.73927 5.79291 5.92620 6.07282 6.18433 6.22595 6.31494 6.54491 6.61665 6.81299 6.86298 7.27951 7.40048 7.84673 8.01174 8.09531 8.27449 8.98574 9.44987 10.54328 10.72394 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.006439 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.348992 B = 4347.396609 C = 4778.918089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.090 3.910 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.559 3.441 10 O -0.573 6.573 11 N -0.758 5.758 12 C 0.226 3.774 13 H 0.089 0.911 14 C -0.119 4.119 15 C -0.071 4.071 16 C -0.173 4.173 17 C 0.084 3.916 18 N -0.485 5.485 19 C 0.108 3.892 20 C -0.168 4.168 21 C -0.174 4.174 22 C -0.180 4.180 23 H 0.269 0.731 24 H 0.380 0.620 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -11.503 0.621 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.364 3.636 10 O -0.456 6.456 11 N -0.413 5.413 12 C 0.119 3.881 13 H 0.107 0.893 14 C -0.122 4.122 15 C -0.098 4.098 16 C -0.193 4.193 17 C -0.073 4.073 18 N -0.194 5.194 19 C -0.049 4.049 20 C -0.188 4.188 21 C -0.211 4.211 22 C -0.216 4.216 23 H 0.080 0.920 24 H 0.213 0.787 25 H 0.152 0.848 26 H 0.149 0.851 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.924 -11.390 0.425 12.055 hybrid contribution 0.020 0.641 0.192 0.670 sum 3.945 -10.749 0.617 11.467 Atomic orbital electron populations 1.69989 1.06976 1.27432 1.34997 1.25666 0.94609 1.00194 0.92564 0.86457 0.79864 0.81116 0.79479 1.19262 1.20570 1.19329 1.20841 0.93585 0.89360 1.54397 0.91531 1.18152 0.87247 0.82173 0.76061 1.90531 1.13890 1.86518 1.54669 1.46315 1.08459 1.04274 1.82298 1.18851 0.94061 0.82326 0.92894 0.89289 1.21203 0.96075 0.97458 0.97425 1.21517 1.00534 0.93268 0.94441 1.22078 0.95266 1.00148 1.01836 1.22689 0.93469 0.96470 0.94707 1.67686 1.39534 1.03152 1.08983 1.22586 0.90192 0.95406 0.96719 1.22660 1.07157 0.95987 0.93022 1.22899 0.97868 1.02942 0.97388 1.23451 0.92574 1.03445 1.02169 0.92025 0.78748 0.84783 0.85062 0.83196 0.82804 0.89087 0.87755 0.90534 0.90710 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.11 11.83 55.55 0.66 -21.45 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.76 29.56 -169.99 -5.02 14.74 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -14.77 9.54 -35.63 -0.34 -15.11 16 8 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 9 C 0.56 14.80 6.58 -12.99 -0.09 14.71 16 10 O -0.57 -17.01 12.05 5.19 0.06 -16.94 16 11 N -0.76 -15.96 3.56 -56.34 -0.20 -16.16 16 12 C 0.23 4.18 2.65 -69.08 -0.18 4.00 16 13 H 0.09 1.85 7.47 -51.93 -0.39 1.47 16 14 C -0.12 -1.87 4.95 -104.48 -0.52 -2.38 16 15 C -0.07 -0.96 9.82 -39.28 -0.39 -1.35 16 16 C -0.17 -2.01 10.11 -39.44 -0.40 -2.41 16 17 C 0.08 1.04 11.18 -17.55 -0.20 0.84 16 18 N -0.49 -7.28 10.36 -13.25 -0.14 -7.41 16 19 C 0.11 1.66 10.23 -17.55 -0.18 1.48 16 20 C -0.17 -2.96 5.69 -90.62 -0.52 -3.48 16 21 C -0.17 -3.13 9.74 -26.69 -0.26 -3.39 16 22 C -0.18 -3.54 9.82 -26.69 -0.26 -3.81 16 23 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 24 H 0.38 7.26 6.88 -40.82 -0.28 6.98 16 25 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.15 2.26 6.93 -52.49 -0.36 1.90 16 29 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 30 H 0.10 2.07 6.67 -51.93 -0.35 1.73 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.14 3.32 5.01 -51.93 -0.26 3.06 16 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -31.58 282.15 -7.53 -39.11 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -3.72 Total: 12.42 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.42 Total: -8.55 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.32 Total: -45.02 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.06 Total: -16.94 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.58 -7.53 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357630947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.192 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds