Wall clock time and date at job start Mon Mar 30 2020 04:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48502 * 109.47096 * 239.99499 * 3 2 1 5 5 H 1.48497 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47449 * 119.99557 * 3 2 1 7 7 C 1.40054 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99917 * 0.02562 * 7 2 1 10 10 O 1.21697 * 120.00071 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00155 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00276 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.46618 * 325.00159 * 12 11 9 14 14 C 1.50700 * 109.46780 * 204.99995 * 12 11 9 15 15 C 1.38677 * 120.41537 * 140.26447 * 14 12 11 16 16 C 1.38625 * 118.42126 * 180.22222 * 15 14 12 17 17 C 1.38223 * 119.15978 * 359.46985 * 16 15 14 18 18 N 1.31856 * 120.76567 * 0.30777 * 17 16 15 19 19 C 1.31884 * 121.72562 * 359.97275 * 18 17 16 20 20 C 1.53004 * 109.47242 * 85.00028 * 12 11 9 21 21 C 1.53000 * 117.49703 * 8.74763 * 20 12 11 22 22 C 1.53000 * 117.49753 * 300.08729 * 20 12 11 23 23 H 0.97001 * 119.99699 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99850 * 0.02562 * 11 9 7 25 25 H 1.08003 * 120.78603 * 359.97006 * 15 14 12 26 26 H 1.08002 * 120.42343 * 179.75479 * 16 15 14 27 27 H 1.08005 * 119.61951 * 180.28273 * 17 16 15 28 28 H 1.07998 * 119.61861 * 180.02562 * 19 18 17 29 29 H 1.08996 * 115.54966 * 154.41515 * 20 12 11 30 30 H 1.09003 * 117.50133 * 359.97438 * 21 20 12 31 31 H 1.08997 * 117.49976 * 145.02033 * 21 20 12 32 32 H 1.08995 * 117.49929 * 214.97371 * 22 20 12 33 33 H 1.09001 * 117.49865 * 359.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0580 -2.4805 0.0005 11 7 1.9488 -3.6477 0.0005 12 6 1.2162 -4.9164 0.0000 13 1 0.3053 -4.8102 0.5891 14 6 2.0800 -5.9954 0.6005 15 6 1.5283 -6.9487 1.4432 16 6 2.3618 -7.9196 1.9763 17 6 3.7034 -7.9121 1.6438 18 7 4.1928 -6.9926 0.8353 19 6 3.4307 -6.0507 0.3142 20 6 0.8529 -5.2950 -1.4373 21 6 1.4620 -4.4577 -2.5638 22 6 -0.0243 -4.3194 -2.2245 23 1 -0.4850 0.8401 -0.0004 24 1 2.9187 -3.6478 0.0009 25 1 0.4751 -6.9325 1.6817 26 1 1.9670 -8.6752 2.6394 27 1 4.3586 -8.6679 2.0513 28 1 3.8673 -5.3146 -0.3445 29 1 0.7117 -6.3599 -1.6216 30 1 2.1212 -3.6370 -2.2810 31 1 1.7211 -4.9718 -3.4893 32 1 -0.7423 -4.7425 -2.9270 33 1 -0.3429 -3.4081 -1.7183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357630947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:06 Heat of formation + Delta-G solvation = 3.404891 kcal Electronic energy + Delta-G solvation = -17540.088029 eV Core-core repulsion = 14758.722713 eV Total energy + Delta-G solvation = -2781.365316 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41336 -39.86496 -37.55032 -34.94378 -34.48259 -33.34102 -32.03731 -28.86312 -27.19509 -24.57760 -23.47445 -23.06676 -22.31640 -20.53753 -19.36622 -18.03841 -17.51749 -17.27123 -16.82069 -16.45989 -15.82932 -15.42268 -15.12624 -14.64408 -14.41050 -13.95110 -13.88900 -13.55326 -13.27893 -12.75121 -12.74288 -12.60787 -12.57316 -12.22496 -12.03660 -11.25059 -10.94570 -10.90092 -10.70246 -10.33638 -9.97155 -9.72924 -9.37424 -8.26409 -6.82167 0.17442 0.34400 1.40280 1.42604 1.53644 2.24658 2.50123 2.83185 2.88310 3.23284 3.47078 3.63615 3.73926 4.00227 4.03643 4.14126 4.17851 4.26131 4.32196 4.55097 4.65287 4.75733 4.85703 4.91723 5.06828 5.19591 5.33300 5.35152 5.37607 5.58689 5.78202 5.91598 6.22379 6.30137 6.90230 7.03176 7.54897 8.52939 8.70685 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.006439 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.348992 B = 4347.396609 C = 4778.918089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.550 3.450 10 O -0.612 6.612 11 N -0.746 5.746 12 C 0.229 3.771 13 H 0.059 0.941 14 C -0.135 4.135 15 C -0.077 4.077 16 C -0.160 4.160 17 C 0.085 3.915 18 N -0.505 5.505 19 C 0.098 3.902 20 C -0.152 4.152 21 C -0.163 4.163 22 C -0.202 4.202 23 H 0.273 0.727 24 H 0.390 0.610 25 H 0.145 0.855 26 H 0.171 0.829 27 H 0.186 0.814 28 H 0.151 0.849 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -13.149 1.014 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.612 4.612 8 H 0.099 0.901 9 C 0.354 3.646 10 O -0.498 6.498 11 N -0.400 5.400 12 C 0.123 3.877 13 H 0.077 0.923 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.179 4.179 17 C -0.072 4.072 18 N -0.214 5.214 19 C -0.058 4.058 20 C -0.172 4.172 21 C -0.200 4.200 22 C -0.238 4.238 23 H 0.083 0.917 24 H 0.224 0.776 25 H 0.163 0.837 26 H 0.188 0.812 27 H 0.203 0.797 28 H 0.168 0.832 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.687 -13.074 0.816 14.281 hybrid contribution -0.513 1.000 0.129 1.132 sum 5.174 -12.074 0.945 13.170 Atomic orbital electron populations 1.70151 1.09184 1.28788 1.36457 1.26799 0.95448 1.04448 0.91339 0.85195 0.78337 0.75471 0.80084 1.18046 1.19954 1.18217 1.21367 0.94517 0.90381 1.54950 0.90117 1.18340 0.86884 0.83692 0.75691 1.90509 1.15586 1.87497 1.56239 1.45965 1.08868 1.04202 1.80969 1.18804 0.93305 0.82089 0.93538 0.92288 1.20893 0.95907 0.97657 0.99333 1.21774 1.01599 0.93167 0.93821 1.22463 0.94591 0.99781 1.01049 1.23372 0.94534 0.96055 0.93282 1.67726 1.39836 1.03783 1.10032 1.22508 0.90031 0.95969 0.97294 1.22699 1.05325 0.96929 0.92199 1.22880 0.95908 1.02418 0.98825 1.23256 0.94259 1.02595 1.03721 0.91699 0.77585 0.83674 0.81153 0.79688 0.83197 0.86227 0.90101 0.87350 0.88428 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.05 11.83 21.84 0.26 -48.79 16 2 C 0.04 1.94 5.50 85.31 0.47 2.41 16 3 Si 0.99 40.95 29.56 68.60 2.03 42.97 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.58 -32.07 9.54 24.83 0.24 -31.84 16 8 H 0.08 4.10 7.85 -2.91 -0.02 4.07 16 9 C 0.55 30.47 6.58 86.36 0.57 31.04 16 10 O -0.61 -38.54 12.05 -4.34 -0.05 -38.60 16 11 N -0.75 -32.48 3.56 -450.39 -1.60 -34.08 16 12 C 0.23 8.67 2.65 44.25 0.12 8.78 16 13 H 0.06 2.58 7.47 -2.39 -0.02 2.57 16 14 C -0.14 -4.13 4.95 -19.77 -0.10 -4.22 16 15 C -0.08 -1.92 9.82 22.47 0.22 -1.70 16 16 C -0.16 -3.08 10.11 22.36 0.23 -2.85 16 17 C 0.08 1.79 11.18 84.69 0.95 2.73 16 18 N -0.51 -14.03 10.36 -195.84 -2.03 -16.06 16 19 C 0.10 2.92 10.23 84.67 0.87 3.79 16 20 C -0.15 -5.32 5.69 -10.79 -0.06 -5.38 16 21 C -0.16 -5.84 9.74 30.62 0.30 -5.54 16 22 C -0.20 -8.15 9.82 30.62 0.30 -7.85 16 23 H 0.27 15.01 8.29 -92.71 -0.77 14.24 16 24 H 0.39 15.29 6.88 -92.71 -0.64 14.65 16 25 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 26 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.15 4.38 6.93 -2.91 -0.02 4.36 16 29 H 0.12 3.53 8.11 -2.39 -0.02 3.51 16 30 H 0.08 3.29 6.67 -2.39 -0.02 3.27 16 31 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.08 4.44 5.01 -2.39 -0.01 4.43 16 Total: -1.00 -72.20 282.15 3.19 -69.01 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.50 Total: 36.17 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.09 Total: -10.63 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -3.37 Total: -98.93 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.05 Total: -38.60 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -72.20 3.19 -69.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357630947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.415 kcal (2) G-P(sol) polarization free energy of solvation -72.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds