Wall clock time and date at job start Mon Mar 30 2020 04:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86802 * 120.00114 * 2 1 4 4 H 1.48492 * 109.47373 * 270.00110 * 3 2 1 5 5 H 1.48500 * 109.46901 * 30.00432 * 3 2 1 6 6 H 1.48501 * 109.46725 * 149.99917 * 3 2 1 7 7 C 1.39917 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99978 * 190.46293 * 7 2 1 9 9 C 1.41125 * 119.99998 * 10.45866 * 7 2 1 10 10 C 1.40881 * 120.16113 * 29.00194 * 9 7 2 11 11 C 1.36358 * 119.83296 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16550 * 0.24913 * 11 10 9 13 13 N 1.39096 * 119.83933 * 179.75258 * 12 11 10 14 14 C 1.34774 * 119.99822 * 215.92204 * 13 12 11 15 15 O 1.21623 * 120.00284 * 355.35534 * 14 13 12 16 16 C 1.47047 * 120.00062 * 175.35214 * 14 13 12 17 17 C 1.33036 * 120.00067 * 186.75255 * 16 14 13 18 18 C 1.50697 * 120.00143 * 12.79354 * 17 16 14 19 19 N 1.46896 * 109.47243 * 129.47279 * 18 17 16 20 20 C 1.39524 * 120.32339 * 359.48928 * 12 11 10 21 21 C 1.36353 * 120.16939 * 0.51268 * 20 12 11 22 22 H 0.96999 * 120.00057 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.08595 * 359.97438 * 10 9 7 24 24 H 1.07996 * 119.92040 * 179.97438 * 11 10 9 25 25 H 0.97000 * 120.00160 * 35.91665 * 13 12 11 26 26 H 1.08002 * 119.99809 * 6.75346 * 16 14 13 27 27 H 1.08000 * 119.99518 * 192.79316 * 17 16 14 28 28 H 1.09001 * 109.46730 * 249.47557 * 18 17 16 29 29 H 1.08996 * 109.47270 * 9.46879 * 18 17 16 30 30 H 1.00908 * 110.99824 * 56.04486 * 19 18 17 31 31 H 1.00900 * 111.00386 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.91333 * 180.25883 * 20 12 11 33 33 H 1.07999 * 120.09188 * 179.71869 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5402 1.4400 0.7001 7 6 2.0082 -1.2117 -0.0005 8 1 3.0748 -1.2196 0.1693 9 6 1.3201 -2.4236 -0.2229 10 6 0.1529 -2.4405 -1.0117 11 6 -0.5069 -3.6152 -1.2218 12 6 -0.0317 -4.7975 -0.6536 13 7 -0.7130 -5.9911 -0.8681 14 6 -0.7854 -6.9115 0.1137 15 8 -0.1850 -6.7365 1.1568 16 6 -1.5905 -8.1273 -0.0762 17 6 -1.7720 -8.9699 0.9372 18 6 -1.4080 -8.5524 2.3387 19 7 -2.5388 -8.8177 3.2380 20 6 1.1266 -4.7895 0.1242 21 6 1.7969 -3.6225 0.3430 22 1 -0.4850 0.8400 0.0004 23 1 -0.2188 -1.5252 -1.4482 24 1 -1.4020 -3.6296 -1.8258 25 1 -1.1361 -6.1609 -1.7243 26 1 -2.0344 -8.3362 -1.0383 27 1 -2.1802 -9.9531 0.7554 28 1 -0.5381 -9.1185 2.6720 29 1 -1.1753 -7.4877 2.3518 30 1 -2.8155 -9.7872 3.1948 31 1 -2.3194 -8.5465 4.1847 32 1 1.4908 -5.7094 0.5574 33 1 2.6909 -3.6170 0.9491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380898699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:47 Heat of formation + Delta-G solvation = 12.589562 kcal Electronic energy + Delta-G solvation = -16785.801986 eV Core-core repulsion = 14004.834948 eV Total energy + Delta-G solvation = -2780.967039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79400 -37.46260 -35.45941 -34.28776 -32.97070 -31.81912 -29.57223 -28.90188 -25.78804 -24.35902 -22.19925 -21.27267 -20.29852 -19.15464 -17.33961 -16.61419 -16.52495 -15.50366 -15.17170 -14.91897 -14.56002 -14.14418 -13.87247 -13.36187 -12.95829 -12.60466 -12.18392 -11.99436 -11.78254 -11.74939 -11.27008 -11.12133 -11.01020 -10.68996 -9.90476 -9.58483 -9.51497 -9.33622 -9.04126 -8.75079 -8.53593 -7.52805 -6.91483 -6.68484 -4.30850 1.44946 2.70780 3.08223 3.10736 3.12770 3.16318 3.66606 3.87596 3.96073 4.67030 4.68208 5.00461 5.08869 5.42627 5.54211 5.70053 5.96003 6.22094 6.29766 6.44526 6.65996 6.82959 6.97026 7.06728 7.08357 7.22418 7.30507 7.40382 7.62811 7.76516 7.90812 8.05573 8.29883 8.31846 8.61728 8.79567 8.90689 9.01683 10.23914 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.044205 B = 0.004484 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.261142 B = 6243.574427 C = 6411.447954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.105 3.895 10 C -0.148 4.148 11 C -0.115 4.115 12 C -0.006 4.006 13 N -0.644 5.644 14 C 0.527 3.473 15 O -0.530 6.530 16 C -0.206 4.206 17 C -0.065 4.065 18 C 0.046 3.954 19 N -0.848 5.848 20 C -0.078 4.078 21 C -0.214 4.214 22 H 0.280 0.720 23 H 0.124 0.876 24 H 0.091 0.909 25 H 0.396 0.604 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.037 0.963 29 H 0.137 0.863 30 H 0.329 0.671 31 H 0.344 0.656 32 H 0.106 0.894 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -11.597 -0.986 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.102 3.898 10 C -0.167 4.167 11 C -0.135 4.135 12 C -0.099 4.099 13 N -0.285 5.285 14 C 0.318 3.682 15 O -0.410 6.410 16 C -0.228 4.228 17 C -0.086 4.086 18 C -0.082 4.082 19 N -0.377 5.377 20 C -0.098 4.098 21 C -0.234 4.234 22 H 0.090 0.910 23 H 0.141 0.859 24 H 0.109 0.891 25 H 0.229 0.771 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.055 0.945 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.906 -10.763 -0.699 11.471 hybrid contribution 0.573 -0.104 0.005 0.582 sum -3.333 -10.866 -0.694 11.387 Atomic orbital electron populations 1.69806 1.07425 1.29021 1.36470 1.25907 0.94843 1.01242 0.92457 0.86248 0.80350 0.80530 0.79185 1.19373 1.20323 1.18672 1.19561 0.95915 0.90547 1.42889 0.90458 1.17690 0.91666 0.92199 0.88197 1.20959 0.98558 0.96054 1.01179 1.20274 0.98959 0.92069 1.02227 1.17214 0.96859 0.84280 1.11517 1.42889 1.53433 1.17023 1.15132 1.18606 0.82363 0.83680 0.83574 1.90567 1.45817 1.78081 1.26557 1.22631 1.03353 0.95962 1.00864 1.23499 0.93668 0.96832 0.94557 1.21892 0.90581 1.06617 0.89135 1.58873 1.40242 1.26049 1.12541 1.20374 0.93276 0.97844 0.98321 1.20720 1.03053 0.93278 1.06332 0.90954 0.85871 0.89129 0.77060 0.85556 0.86435 0.94533 0.84609 0.85961 0.84291 0.87572 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.90 10.83 55.55 0.60 -20.30 16 2 C 0.07 1.82 5.25 -17.34 -0.09 1.73 16 3 Si 0.91 18.83 29.57 -169.99 -5.03 13.80 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.29 9.04 -37.86 -0.34 -12.64 16 8 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 9 C 0.11 2.84 5.55 -106.80 -0.59 2.25 16 10 C -0.15 -3.82 8.60 -39.26 -0.34 -4.16 16 11 C -0.12 -2.66 9.90 -39.78 -0.39 -3.06 16 12 C -0.01 -0.14 6.29 -83.61 -0.53 -0.67 16 13 N -0.64 -11.57 5.29 -10.82 -0.06 -11.62 16 14 C 0.53 9.38 7.42 -12.69 -0.09 9.29 16 15 O -0.53 -11.14 10.63 5.26 0.06 -11.09 16 16 C -0.21 -2.70 10.01 -37.82 -0.38 -3.08 16 17 C -0.07 -0.79 9.84 -36.12 -0.36 -1.15 16 18 C 0.05 0.64 6.43 -4.98 -0.03 0.60 16 19 N -0.85 -9.81 9.61 -11.41 -0.11 -9.92 16 20 C -0.08 -1.90 8.60 -39.78 -0.34 -2.24 16 21 C -0.21 -5.48 9.74 -39.26 -0.38 -5.86 16 22 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 23 H 0.12 3.27 6.21 -52.48 -0.33 2.94 16 24 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 25 H 0.40 5.58 8.80 -40.82 -0.36 5.22 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.14 2.41 4.73 -53.35 -0.25 2.16 16 30 H 0.33 2.96 8.99 -39.29 -0.35 2.60 16 31 H 0.34 3.56 9.08 -39.29 -0.36 3.20 16 32 H 0.11 2.52 6.28 -52.49 -0.33 2.19 16 33 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 284.55 15.07 4.29 4.29 Total: -1.00 -30.30 284.55 -7.75 -38.05 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -3.64 Total: 15.76 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.87 Total: -18.98 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.43 Total: -41.84 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.06 Total: -11.09 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.30 -7.75 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380898699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.640 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds