Wall clock time and date at job start Mon Mar 30 2020 04:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86802 * 120.00114 * 2 1 4 4 H 1.48492 * 109.47373 * 270.00110 * 3 2 1 5 5 H 1.48500 * 109.46901 * 30.00432 * 3 2 1 6 6 H 1.48501 * 109.46725 * 149.99917 * 3 2 1 7 7 C 1.39917 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99978 * 190.46293 * 7 2 1 9 9 C 1.41125 * 119.99998 * 10.45866 * 7 2 1 10 10 C 1.40881 * 120.16113 * 29.00194 * 9 7 2 11 11 C 1.36358 * 119.83296 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16550 * 0.24913 * 11 10 9 13 13 N 1.39096 * 119.83933 * 179.75258 * 12 11 10 14 14 C 1.34774 * 119.99822 * 215.92204 * 13 12 11 15 15 O 1.21623 * 120.00284 * 355.35534 * 14 13 12 16 16 C 1.47047 * 120.00062 * 175.35214 * 14 13 12 17 17 C 1.33036 * 120.00067 * 186.75255 * 16 14 13 18 18 C 1.50697 * 120.00143 * 12.79354 * 17 16 14 19 19 N 1.46896 * 109.47243 * 129.47279 * 18 17 16 20 20 C 1.39524 * 120.32339 * 359.48928 * 12 11 10 21 21 C 1.36353 * 120.16939 * 0.51268 * 20 12 11 22 22 H 0.96999 * 120.00057 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.08595 * 359.97438 * 10 9 7 24 24 H 1.07996 * 119.92040 * 179.97438 * 11 10 9 25 25 H 0.97000 * 120.00160 * 35.91665 * 13 12 11 26 26 H 1.08002 * 119.99809 * 6.75346 * 16 14 13 27 27 H 1.08000 * 119.99518 * 192.79316 * 17 16 14 28 28 H 1.09001 * 109.46730 * 249.47557 * 18 17 16 29 29 H 1.08996 * 109.47270 * 9.46879 * 18 17 16 30 30 H 1.00908 * 110.99824 * 56.04486 * 19 18 17 31 31 H 1.00900 * 111.00386 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.91333 * 180.25883 * 20 12 11 33 33 H 1.07999 * 120.09188 * 179.71869 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5402 1.4400 0.7001 7 6 2.0082 -1.2117 -0.0005 8 1 3.0748 -1.2196 0.1693 9 6 1.3201 -2.4236 -0.2229 10 6 0.1529 -2.4405 -1.0117 11 6 -0.5069 -3.6152 -1.2218 12 6 -0.0317 -4.7975 -0.6536 13 7 -0.7130 -5.9911 -0.8681 14 6 -0.7854 -6.9115 0.1137 15 8 -0.1850 -6.7365 1.1568 16 6 -1.5905 -8.1273 -0.0762 17 6 -1.7720 -8.9699 0.9372 18 6 -1.4080 -8.5524 2.3387 19 7 -2.5388 -8.8177 3.2380 20 6 1.1266 -4.7895 0.1242 21 6 1.7969 -3.6225 0.3430 22 1 -0.4850 0.8400 0.0004 23 1 -0.2188 -1.5252 -1.4482 24 1 -1.4020 -3.6296 -1.8258 25 1 -1.1361 -6.1609 -1.7243 26 1 -2.0344 -8.3362 -1.0383 27 1 -2.1802 -9.9531 0.7554 28 1 -0.5381 -9.1185 2.6720 29 1 -1.1753 -7.4877 2.3518 30 1 -2.8155 -9.7872 3.1948 31 1 -2.3194 -8.5465 4.1847 32 1 1.4908 -5.7094 0.5574 33 1 2.6909 -3.6170 0.9491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380898699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:47 Heat of formation + Delta-G solvation = -9.006657 kcal Electronic energy + Delta-G solvation = -16786.738469 eV Core-core repulsion = 14004.834948 eV Total energy + Delta-G solvation = -2781.903521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.28756 -39.22882 -36.74101 -35.84097 -34.73467 -32.89598 -31.48498 -30.74714 -27.35762 -25.76879 -23.68364 -23.05508 -21.99357 -20.53287 -19.26187 -18.11371 -17.87931 -17.08028 -16.55932 -16.20937 -15.75443 -15.67430 -15.42511 -14.76720 -14.67954 -14.20441 -13.99821 -13.60608 -13.34097 -13.06711 -12.87136 -12.79098 -12.77045 -12.38625 -11.70540 -11.39470 -11.17942 -10.80198 -10.55972 -10.19895 -9.56425 -9.46813 -8.78372 -8.56171 -6.30301 0.33557 0.92690 1.14384 1.39662 1.50461 1.53399 2.22804 2.31878 2.47650 2.80041 3.70226 3.74109 3.98119 4.09949 4.38351 4.43562 4.52161 4.57815 4.89795 4.93293 5.13049 5.19039 5.28969 5.31911 5.45281 5.63602 5.70372 5.93280 6.03741 6.11475 6.16586 6.37851 6.61394 6.65765 6.78658 6.93881 6.99484 7.45022 8.37560 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.044205 B = 0.004484 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.261142 B = 6243.574427 C = 6411.447954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.074 0.926 9 C 0.073 3.927 10 C -0.165 4.165 11 C -0.115 4.115 12 C 0.011 3.989 13 N -0.640 5.640 14 C 0.519 3.481 15 O -0.568 6.568 16 C -0.214 4.214 17 C -0.050 4.050 18 C 0.043 3.957 19 N -0.851 5.851 20 C -0.090 4.090 21 C -0.231 4.231 22 H 0.288 0.712 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.417 0.583 26 H 0.169 0.831 27 H 0.162 0.838 28 H 0.038 0.962 29 H 0.095 0.905 30 H 0.347 0.653 31 H 0.349 0.651 32 H 0.107 0.893 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -13.079 -1.728 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.092 0.908 9 C 0.071 3.929 10 C -0.185 4.185 11 C -0.135 4.135 12 C -0.083 4.083 13 N -0.284 5.284 14 C 0.312 3.688 15 O -0.451 6.451 16 C -0.235 4.235 17 C -0.069 4.069 18 C -0.086 4.086 19 N -0.382 5.382 20 C -0.110 4.110 21 C -0.251 4.251 22 H 0.098 0.902 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.255 0.745 26 H 0.186 0.814 27 H 0.180 0.820 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.125 0.875 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.300 -12.295 -1.461 13.468 hybrid contribution 0.912 0.143 0.322 0.978 sum -4.388 -12.152 -1.139 12.970 Atomic orbital electron populations 1.69858 1.08819 1.30395 1.36926 1.26756 0.95658 1.04418 0.91331 0.85124 0.78778 0.75706 0.79585 1.18347 1.19292 1.18533 1.19792 0.96048 0.91754 1.45193 0.90814 1.18005 0.92777 0.92853 0.89283 1.20963 0.98975 0.96765 1.01819 1.20538 0.99568 0.91268 1.02148 1.17289 0.95874 0.85995 1.09155 1.42839 1.53295 1.15613 1.16634 1.19530 0.82117 0.84528 0.82604 1.90590 1.47390 1.79043 1.28047 1.22689 1.03810 0.93725 1.03285 1.23862 0.91887 0.98177 0.93024 1.21684 0.91598 1.04152 0.91159 1.58808 1.39188 1.27564 1.12672 1.20493 0.94112 0.97341 0.99049 1.20856 1.03550 0.93806 1.06891 0.90184 0.87027 0.85863 0.74522 0.81376 0.82015 0.94363 0.88712 0.83933 0.83735 0.87471 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.40 10.83 21.82 0.24 -44.16 16 2 C 0.03 1.64 5.25 85.24 0.45 2.09 16 3 Si 0.99 39.02 29.57 68.60 2.03 41.05 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.75 9.04 23.39 0.21 -27.54 16 8 H 0.07 3.98 7.87 -2.91 -0.02 3.95 16 9 C 0.07 4.12 5.55 -21.27 -0.12 4.00 16 10 C -0.17 -8.78 8.60 22.48 0.19 -8.59 16 11 C -0.12 -5.29 9.90 22.14 0.22 -5.07 16 12 C 0.01 0.48 6.29 38.61 0.24 0.72 16 13 N -0.64 -21.87 5.29 -306.41 -1.62 -23.49 16 14 C 0.52 17.69 7.42 86.55 0.64 18.34 16 15 O -0.57 -24.00 10.63 -4.10 -0.04 -24.04 16 16 C -0.21 -4.84 10.01 23.42 0.23 -4.61 16 17 C -0.05 -1.02 9.84 24.52 0.24 -0.78 16 18 C 0.04 1.12 6.43 85.56 0.55 1.67 16 19 N -0.85 -17.88 9.61 -190.02 -1.83 -19.71 16 20 C -0.09 -4.45 8.60 22.14 0.19 -4.26 16 21 C -0.23 -12.35 9.74 22.48 0.22 -12.13 16 22 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 23 H 0.11 6.12 6.21 -2.91 -0.02 6.10 16 24 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 25 H 0.42 10.53 8.80 -92.71 -0.82 9.72 16 26 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 27 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 3.38 4.73 -24.82 -0.12 3.26 16 30 H 0.35 5.16 8.99 -89.69 -0.81 4.35 16 31 H 0.35 6.76 9.08 -89.69 -0.81 5.94 16 32 H 0.11 5.23 6.28 -2.91 -0.02 5.21 16 33 H 0.09 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -68.68 284.55 0.67 -68.01 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -1.37 Total: 38.51 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 3.27 Total: -36.16 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -3.21 Total: -87.36 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.04 Total: -24.04 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -68.68 0.67 -68.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380898699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.002 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds