Wall clock time and date at job start Mon Mar 30 2020 04:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86806 * 120.00066 * 2 1 4 4 H 1.48498 * 109.47000 * 239.99603 * 3 2 1 5 5 H 1.48501 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47036 * 119.99455 * 3 2 1 7 7 C 1.39907 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99477 * 196.82418 * 7 2 1 9 9 C 1.41143 * 120.00277 * 16.82724 * 7 2 1 10 10 C 1.40866 * 120.16811 * 205.33269 * 9 7 2 11 11 C 1.36368 * 119.83196 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.17103 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83694 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00106 * 145.62004 * 13 12 11 15 15 O 1.21287 * 119.99964 * 354.89807 * 14 13 12 16 16 C 1.50694 * 120.00110 * 174.90314 * 14 13 12 17 17 H 1.09005 * 112.78311 * 311.30177 * 16 14 13 18 18 C 1.53507 * 113.47921 * 82.11319 * 16 14 13 19 19 C 1.53507 * 83.57563 * 88.74152 * 18 16 14 20 20 N 1.47475 * 113.47814 * 180.49584 * 16 14 13 21 21 C 1.39482 * 120.32518 * 0.29345 * 12 11 10 22 22 C 1.36370 * 120.17455 * 359.44578 * 21 12 11 23 23 H 0.97006 * 119.99757 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.08320 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.91736 * 180.02562 * 11 10 9 26 26 H 0.96997 * 119.99863 * 325.62221 * 13 12 11 27 27 H 1.09001 * 114.17232 * 202.39367 * 18 16 14 28 28 H 1.09002 * 114.17207 * 335.09833 * 18 16 14 29 29 H 1.08996 * 113.47835 * 271.25368 * 19 18 16 30 30 H 1.09004 * 113.47476 * 140.79350 * 19 18 16 31 31 H 1.00907 * 111.00333 * 23.93334 * 20 16 14 32 32 H 1.08000 * 119.90944 * 179.72696 * 21 12 11 33 33 H 1.08001 * 120.08853 * 180.25581 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2778 2.7465 -0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0536 -1.2315 0.2713 9 6 1.3478 -2.4080 -0.3528 10 6 1.8188 -3.6453 0.1284 11 6 1.1758 -4.7970 -0.2177 12 6 0.0541 -4.7520 -1.0455 13 7 -0.5974 -5.9321 -1.3941 14 6 -1.9356 -5.9412 -1.5542 15 8 -2.5829 -4.9462 -1.3052 16 6 -2.6276 -7.1876 -2.0425 17 1 -2.1531 -7.6154 -2.9257 18 6 -2.8930 -8.2145 -0.9328 19 6 -4.2037 -7.4340 -0.7615 20 7 -4.0883 -7.0344 -2.1765 21 6 -0.4149 -3.5311 -1.5304 22 6 0.2145 -2.3706 -1.1887 23 1 -0.4850 0.8401 -0.0004 24 1 2.6870 -3.6817 0.7698 25 1 1.5355 -5.7463 0.1508 26 1 -0.0882 -6.7478 -1.5216 27 1 -3.0249 -9.2353 -1.2916 28 1 -2.2143 -8.1389 -0.0832 29 1 -4.1237 -6.5983 -0.0664 30 1 -5.0649 -8.0707 -0.5589 31 1 -4.3405 -6.0653 -2.3003 32 1 -1.2814 -3.5045 -2.1745 33 1 -0.1523 -1.4257 -1.5616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384779252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:57 Heat of formation + Delta-G solvation = 18.443382 kcal Electronic energy + Delta-G solvation = -17135.714299 eV Core-core repulsion = 14355.001101 eV Total energy + Delta-G solvation = -2780.713198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74943 -38.41111 -36.83051 -34.51763 -33.01058 -29.59829 -29.25120 -27.69232 -26.81994 -24.70652 -22.07336 -21.31680 -20.33179 -19.03789 -17.60243 -17.34590 -16.47953 -16.11857 -15.32737 -15.09934 -14.21441 -14.00757 -13.78150 -13.05464 -12.99502 -12.64801 -12.11388 -12.05141 -11.85897 -11.54816 -11.31868 -11.13231 -11.00882 -10.74240 -10.56086 -10.08081 -9.96894 -9.68335 -9.38264 -8.96506 -8.68488 -7.57574 -7.06139 -6.77154 -4.33559 2.46128 2.93644 3.04507 3.06340 3.08136 3.27944 3.60209 3.90795 4.16320 4.37284 4.61589 4.88121 5.04577 5.32268 5.43812 5.63748 5.66187 5.69006 5.84889 5.97997 6.10339 6.32903 6.73488 6.93199 6.99756 7.10652 7.11942 7.24188 7.54293 7.61809 7.90302 8.00820 8.13967 8.26256 8.57684 8.67650 8.84372 8.95470 10.15760 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.047687 B = 0.004929 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.024164 B = 5679.271083 C = 6059.140776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.216 4.216 11 C -0.102 4.102 12 C -0.012 4.012 13 N -0.642 5.642 14 C 0.489 3.511 15 O -0.530 6.530 16 C 0.007 3.993 17 H 0.114 0.886 18 C -0.131 4.131 19 C -0.002 4.002 20 N -0.608 5.608 21 C -0.084 4.084 22 C -0.156 4.156 23 H 0.282 0.718 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.396 0.604 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.335 0.665 32 H 0.099 0.901 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -10.744 -2.145 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.236 4.236 11 C -0.122 4.122 12 C -0.104 4.104 13 N -0.284 5.284 14 C 0.274 3.726 15 O -0.407 6.407 16 C -0.108 4.108 17 H 0.132 0.868 18 C -0.169 4.169 19 C -0.132 4.132 20 N -0.235 5.235 21 C -0.104 4.104 22 C -0.176 4.176 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.229 0.771 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.348 -10.504 -2.488 11.301 hybrid contribution 0.906 1.152 0.564 1.571 sum -2.441 -9.351 -1.924 9.854 Atomic orbital electron populations 1.69849 1.07592 1.29495 1.34369 1.25954 0.94747 1.01423 0.92314 0.86341 0.80109 0.80145 0.79985 1.18772 1.20289 1.18968 1.19536 0.97776 0.91187 1.40303 0.90335 1.17667 0.91158 0.92098 0.88621 1.20555 1.03852 0.92525 1.06682 1.20048 0.96712 0.97239 0.98168 1.17174 0.99596 0.85005 1.08674 1.42917 1.06303 1.11574 1.67616 1.20765 0.82960 0.89820 0.79091 1.90730 1.64761 1.35034 1.50140 1.23062 0.92520 0.94576 1.00621 0.86835 1.23131 0.97789 0.98335 0.97663 1.23563 0.98539 0.99546 0.91575 1.67524 1.07065 1.28174 1.20726 1.20385 0.98794 0.91687 0.99503 1.20987 0.99029 0.96662 1.00899 0.90653 0.88567 0.89159 0.77072 0.88154 0.90314 0.90796 0.89736 0.84907 0.88287 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.77 10.94 55.55 0.61 -20.16 16 2 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.11 9.04 -37.86 -0.34 -12.45 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 9 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 10 C -0.22 -5.21 9.74 -39.26 -0.38 -5.59 16 11 C -0.10 -2.21 9.90 -39.79 -0.39 -2.60 16 12 C -0.01 -0.27 6.27 -83.57 -0.52 -0.80 16 13 N -0.64 -11.10 5.31 -9.74 -0.05 -11.15 16 14 C 0.49 8.49 6.69 -10.99 -0.07 8.42 16 15 O -0.53 -11.52 13.10 5.55 0.07 -11.44 16 16 C 0.01 0.09 4.85 -72.60 -0.35 -0.26 16 17 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.13 -1.38 8.05 -26.21 -0.21 -1.60 16 19 C 0.00 -0.02 8.18 -7.56 -0.06 -0.08 16 20 N -0.61 -8.22 8.64 -116.74 -1.01 -9.23 16 21 C -0.08 -2.08 8.57 -39.79 -0.34 -2.42 16 22 C -0.16 -4.17 8.63 -39.26 -0.34 -4.51 16 23 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 24 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 26 H 0.40 5.25 8.82 -40.82 -0.36 4.89 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.07 1.04 7.65 -51.93 -0.40 0.65 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.33 5.03 7.72 -39.29 -0.30 4.72 16 32 H 0.10 2.47 6.48 -52.49 -0.34 2.13 16 33 H 0.12 3.33 6.17 -52.49 -0.32 3.01 16 LS Contribution 281.22 15.07 4.24 4.24 Total: -1.00 -29.87 281.22 -8.68 -38.55 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -3.81 Total: 13.47 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -3.70 Total: -17.85 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.45 Total: -40.54 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.87 -8.68 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384779252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.997 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds