Wall clock time and date at job start Mon Mar 30 2020 04:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86806 * 120.00066 * 2 1 4 4 H 1.48498 * 109.47000 * 239.99603 * 3 2 1 5 5 H 1.48501 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47036 * 119.99455 * 3 2 1 7 7 C 1.39907 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99477 * 196.82418 * 7 2 1 9 9 C 1.41143 * 120.00277 * 16.82724 * 7 2 1 10 10 C 1.40866 * 120.16811 * 205.33269 * 9 7 2 11 11 C 1.36368 * 119.83196 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.17103 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83694 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00106 * 145.62004 * 13 12 11 15 15 O 1.21287 * 119.99964 * 354.89807 * 14 13 12 16 16 C 1.50694 * 120.00110 * 174.90314 * 14 13 12 17 17 H 1.09005 * 112.78311 * 311.30177 * 16 14 13 18 18 C 1.53507 * 113.47921 * 82.11319 * 16 14 13 19 19 C 1.53507 * 83.57563 * 88.74152 * 18 16 14 20 20 N 1.47475 * 113.47814 * 180.49584 * 16 14 13 21 21 C 1.39482 * 120.32518 * 0.29345 * 12 11 10 22 22 C 1.36370 * 120.17455 * 359.44578 * 21 12 11 23 23 H 0.97006 * 119.99757 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.08320 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.91736 * 180.02562 * 11 10 9 26 26 H 0.96997 * 119.99863 * 325.62221 * 13 12 11 27 27 H 1.09001 * 114.17232 * 202.39367 * 18 16 14 28 28 H 1.09002 * 114.17207 * 335.09833 * 18 16 14 29 29 H 1.08996 * 113.47835 * 271.25368 * 19 18 16 30 30 H 1.09004 * 113.47476 * 140.79350 * 19 18 16 31 31 H 1.00907 * 111.00333 * 23.93334 * 20 16 14 32 32 H 1.08000 * 119.90944 * 179.72696 * 21 12 11 33 33 H 1.08001 * 120.08853 * 180.25581 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2778 2.7465 -0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0536 -1.2315 0.2713 9 6 1.3478 -2.4080 -0.3528 10 6 1.8188 -3.6453 0.1284 11 6 1.1758 -4.7970 -0.2177 12 6 0.0541 -4.7520 -1.0455 13 7 -0.5974 -5.9321 -1.3941 14 6 -1.9356 -5.9412 -1.5542 15 8 -2.5829 -4.9462 -1.3052 16 6 -2.6276 -7.1876 -2.0425 17 1 -2.1531 -7.6154 -2.9257 18 6 -2.8930 -8.2145 -0.9328 19 6 -4.2037 -7.4340 -0.7615 20 7 -4.0883 -7.0344 -2.1765 21 6 -0.4149 -3.5311 -1.5304 22 6 0.2145 -2.3706 -1.1887 23 1 -0.4850 0.8401 -0.0004 24 1 2.6870 -3.6817 0.7698 25 1 1.5355 -5.7463 0.1508 26 1 -0.0882 -6.7478 -1.5216 27 1 -3.0249 -9.2353 -1.2916 28 1 -2.2143 -8.1389 -0.0832 29 1 -4.1237 -6.5983 -0.0664 30 1 -5.0649 -8.0707 -0.5589 31 1 -4.3405 -6.0653 -2.3003 32 1 -1.2814 -3.5045 -2.1745 33 1 -0.1523 -1.4257 -1.5616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384779252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:57 Heat of formation + Delta-G solvation = -3.549748 kcal Electronic energy + Delta-G solvation = -17136.667992 eV Core-core repulsion = 14355.001101 eV Total energy + Delta-G solvation = -2781.666892 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01727 -39.94215 -38.42373 -36.23450 -34.78349 -31.49925 -31.04948 -28.71753 -28.09662 -26.37159 -23.57802 -23.13074 -21.92379 -20.34227 -19.27502 -18.80686 -18.00923 -17.38408 -16.94027 -16.49164 -15.83512 -15.61952 -15.08525 -14.74062 -14.50454 -14.15562 -13.91770 -13.71318 -13.39137 -12.89377 -12.79600 -12.71914 -12.34324 -12.27883 -11.79294 -11.75304 -11.67554 -11.30074 -11.11602 -10.60249 -10.07027 -9.49318 -8.91219 -8.63811 -6.30236 0.75073 1.10886 1.36534 1.41444 1.50371 1.69743 2.18738 2.23506 2.73295 3.14393 3.40793 3.70248 3.76263 4.02588 4.35512 4.40702 4.42024 4.49970 4.73579 4.83767 4.88100 4.93904 5.06106 5.11633 5.17213 5.26925 5.39916 5.64199 5.82472 5.96978 6.04003 6.07233 6.30433 6.62588 6.67233 6.89701 6.97435 7.32396 8.31121 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.047687 B = 0.004929 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.024164 B = 5679.271083 C = 6059.140776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.495 4.495 8 H 0.084 0.916 9 C 0.074 3.926 10 C -0.224 4.224 11 C -0.096 4.096 12 C 0.002 3.998 13 N -0.632 5.632 14 C 0.488 3.512 15 O -0.578 6.578 16 C 0.012 3.988 17 H 0.143 0.857 18 C -0.110 4.110 19 C -0.010 4.010 20 N -0.611 5.611 21 C -0.099 4.099 22 C -0.182 4.182 23 H 0.287 0.713 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.420 0.580 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.323 0.677 32 H 0.089 0.911 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 -13.198 -2.034 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.524 4.524 8 H 0.102 0.898 9 C 0.072 3.928 10 C -0.244 4.244 11 C -0.116 4.116 12 C -0.091 4.091 13 N -0.277 5.277 14 C 0.275 3.725 15 O -0.458 6.458 16 C -0.103 4.103 17 H 0.161 0.839 18 C -0.148 4.148 19 C -0.140 4.140 20 N -0.236 5.236 21 C -0.119 4.119 22 C -0.202 4.202 23 H 0.098 0.902 24 H 0.130 0.870 25 H 0.155 0.845 26 H 0.258 0.742 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.107 0.893 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.532 -13.027 -2.385 13.483 hybrid contribution 0.553 1.731 0.505 1.886 sum -1.979 -11.295 -1.880 11.621 Atomic orbital electron populations 1.69938 1.09341 1.30630 1.35693 1.26881 0.95412 1.04955 0.91174 0.85197 0.78650 0.75237 0.80293 1.18250 1.19592 1.17900 1.19837 0.98239 0.92237 1.42065 0.89819 1.18012 0.91683 0.93695 0.89437 1.20852 1.04438 0.92459 1.06631 1.20429 0.95758 0.98464 0.96945 1.17257 0.99207 0.85749 1.06932 1.42812 1.06604 1.10964 1.67319 1.21679 0.82639 0.90740 0.77461 1.90723 1.65799 1.37417 1.51886 1.23124 0.91774 0.92834 1.02599 0.83921 1.23200 0.96056 0.98891 0.96610 1.23637 1.00840 0.99306 0.90241 1.67581 1.07384 1.27080 1.21571 1.20422 0.98649 0.92737 1.00070 1.20884 1.00344 0.96468 1.02494 0.90246 0.87016 0.84539 0.74162 0.84853 0.89714 0.93524 0.87694 0.86259 0.89335 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.79 10.94 21.82 0.24 -45.55 16 2 C 0.03 1.57 5.15 85.24 0.44 2.01 16 3 Si 0.99 38.83 29.59 68.60 2.03 40.86 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.49 -26.90 9.04 23.39 0.21 -26.69 16 8 H 0.08 4.27 7.90 -2.91 -0.02 4.25 16 9 C 0.07 4.09 5.57 -21.28 -0.12 3.97 16 10 C -0.22 -10.68 9.74 22.48 0.22 -10.46 16 11 C -0.10 -3.97 9.90 22.13 0.22 -3.76 16 12 C 0.00 0.09 6.27 38.57 0.24 0.33 16 13 N -0.63 -20.37 5.31 -303.11 -1.61 -21.98 16 14 C 0.49 16.26 6.69 87.66 0.59 16.85 16 15 O -0.58 -25.53 13.10 -3.05 -0.04 -25.57 16 16 C 0.01 0.26 4.85 41.43 0.20 0.46 16 17 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 18 C -0.11 -1.87 8.05 30.94 0.25 -1.62 16 19 C -0.01 -0.22 8.18 83.57 0.68 0.46 16 20 N -0.61 -15.39 8.64 -523.24 -4.52 -19.91 16 21 C -0.10 -5.06 8.57 22.13 0.19 -4.87 16 22 C -0.18 -10.23 8.63 22.48 0.19 -10.04 16 23 H 0.29 14.44 8.30 -92.70 -0.77 13.67 16 24 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 25 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 26 H 0.42 9.45 8.82 -92.71 -0.82 8.63 16 27 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 29 H 0.05 1.30 7.65 -2.39 -0.02 1.28 16 30 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.32 9.63 7.72 -89.69 -0.69 8.93 16 32 H 0.09 4.63 6.48 -2.91 -0.02 4.62 16 33 H 0.10 5.73 6.17 -2.91 -0.02 5.71 16 Total: -1.00 -68.61 281.22 -0.95 -69.56 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.36 Total: 35.95 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 3.32 Total: -33.35 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -5.89 Total: -87.44 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.57 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -68.61 -0.95 -69.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384779252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.008 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds