Wall clock time and date at job start Mon Mar 30 2020 03:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48508 * 109.46671 * 239.99886 * 3 2 1 5 5 H 1.48499 * 109.47329 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47482 * 120.00137 * 3 2 1 7 7 C 1.37878 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99721 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99816 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46755 * 179.97438 * 11 10 9 13 13 S 1.81401 * 109.46895 * 180.02562 * 12 11 10 14 14 O 1.42103 * 109.46854 * 296.38622 * 13 12 11 15 15 C 1.81398 * 102.99972 * 180.02562 * 13 12 11 16 16 C 1.54894 * 110.75501 * 185.00154 * 15 13 12 17 17 C 1.54266 * 104.31305 * 156.31767 * 16 15 13 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 C 1.54266 * 106.59800 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99621 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46750 * 59.99930 * 9 7 2 22 22 H 1.08998 * 109.46625 * 299.99651 * 9 7 2 23 23 H 1.08991 * 109.47167 * 59.99650 * 11 10 9 24 24 H 1.08994 * 109.46498 * 299.99345 * 11 10 9 25 25 H 1.09000 * 109.47561 * 59.99857 * 12 11 10 26 26 H 1.09003 * 109.47374 * 299.99645 * 12 11 10 27 27 H 1.08993 * 110.82183 * 61.65696 * 15 13 12 28 28 H 1.09002 * 110.48891 * 37.57192 * 16 15 13 29 29 H 1.08998 * 110.48494 * 275.06280 * 16 15 13 30 30 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 31 31 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 32 32 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 33 33 H 1.09003 * 110.03070 * 240.71854 * 18 17 16 34 34 H 1.09005 * 110.48526 * 142.29451 * 19 18 17 35 35 H 1.09007 * 110.48724 * 264.79935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5650 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0020 13 16 1.8679 -7.5939 0.0006 14 8 1.1254 -7.7658 1.2000 15 6 3.2881 -8.7224 0.0025 16 6 2.8203 -10.1935 -0.1247 17 6 4.0414 -10.9327 -0.7100 18 6 4.8867 -9.8749 -1.4409 19 6 4.1496 -8.5300 -1.2748 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5566 0.8903 23 1 0.9458 -4.9826 -0.8893 24 1 0.9440 -4.9823 0.8906 25 1 3.2676 -5.8492 0.8924 26 1 3.2688 -5.8492 -0.8876 27 1 3.8910 -8.5849 0.9000 28 1 1.9696 -10.2662 -0.8023 29 1 2.5628 -10.5979 0.8542 30 1 4.6231 -11.3863 0.0924 31 1 3.7127 -11.6992 -1.4117 32 1 5.8787 -9.8151 -0.9932 33 1 4.9683 -10.1275 -2.4981 34 1 4.8636 -7.7185 -1.1339 35 1 3.5156 -8.3331 -2.1394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385203220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:55 Heat of formation + Delta-G solvation = -106.953736 kcal Electronic energy + Delta-G solvation = -15483.153368 eV Core-core repulsion = 12800.153743 eV Total energy + Delta-G solvation = -2682.999625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.97059 -36.81629 -35.65274 -32.85625 -30.97301 -29.08479 -28.92417 -27.00513 -22.84597 -22.24090 -21.09954 -20.45864 -17.49887 -16.56735 -16.43410 -15.95787 -15.48246 -15.38625 -14.53214 -14.21353 -13.95685 -13.67207 -13.50028 -13.24399 -12.78896 -12.03764 -11.92074 -11.54180 -11.37911 -11.36698 -11.12633 -11.06787 -10.90731 -10.72827 -10.69574 -10.66874 -10.17637 -9.86771 -9.14262 -8.86146 -8.24578 -8.20592 -6.11888 -4.14267 1.45403 2.60029 3.31586 3.34236 3.38106 3.70354 4.30174 4.33648 4.36283 4.61104 4.92376 5.07835 5.11595 5.15957 5.20017 5.24256 5.37049 5.43606 5.53913 5.63092 5.68404 5.78056 5.81427 5.87433 5.93856 6.06655 6.11703 6.23377 7.07962 7.40555 7.77258 8.12735 8.53468 8.98041 9.50462 10.99578 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051297 B = 0.003772 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.710158 B = 7422.197429 C = 7828.190187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.393 6.393 11 C 0.083 3.917 12 C -0.439 4.439 13 S 1.247 4.753 14 O -0.848 6.848 15 C -0.419 4.419 16 C -0.094 4.094 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.096 4.096 20 H 0.265 0.735 21 H 0.009 0.991 22 H 0.006 0.994 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -20.762 -6.178 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.118 3.882 10 O -0.313 6.313 11 C 0.005 3.995 12 C -0.577 4.577 13 S 1.446 4.554 14 O -0.843 6.843 15 C -0.536 4.536 16 C -0.133 4.133 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.134 4.134 20 H 0.075 0.925 21 H 0.027 0.973 22 H 0.024 0.976 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.141 0.859 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.423 -20.814 -6.134 22.367 hybrid contribution 1.509 1.225 1.982 2.776 sum 6.932 -19.590 -4.152 21.191 Atomic orbital electron populations 1.69956 1.06111 1.27346 1.50258 1.24958 0.95003 0.99451 0.95059 0.86372 0.79298 0.81809 0.78843 1.19947 1.21094 1.20041 1.21015 0.94035 0.89342 1.51238 0.91587 1.20255 0.88829 0.83439 0.95643 1.87879 1.35560 1.12668 1.95229 1.21685 0.92847 0.85165 0.99829 1.27698 1.08467 1.13191 1.08307 1.70443 0.86684 0.85948 1.12295 1.93113 1.57109 1.82764 1.51347 1.28663 1.13826 1.07520 1.03621 1.22004 0.98259 0.91592 1.01446 1.22117 0.96266 0.97901 0.99602 1.22122 0.98862 0.94558 1.00516 1.22157 0.98028 0.98042 0.95191 0.92521 0.97329 0.97619 0.93313 0.94123 0.89204 0.85910 0.88906 0.90583 0.91423 0.92071 0.91479 0.91985 0.91372 0.90865 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -15.53 9.43 -34.44 -0.32 -15.86 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.43 5.69 36.01 0.20 5.63 16 10 O -0.39 -9.81 10.33 -35.23 -0.36 -10.17 16 11 C 0.08 1.60 5.95 37.16 0.22 1.83 16 12 C -0.44 -6.36 6.07 37.16 0.23 -6.13 16 13 S 1.25 14.34 12.65 -107.50 -1.36 12.98 16 14 O -0.85 -15.33 18.14 -35.23 -0.64 -15.97 16 15 C -0.42 -3.94 3.45 -24.53 -0.08 -4.03 16 16 C -0.09 -0.78 6.27 -25.07 -0.16 -0.94 16 17 C -0.12 -0.84 6.80 -25.62 -0.17 -1.01 16 18 C -0.12 -0.82 6.80 -25.62 -0.17 -1.00 16 19 C -0.10 -0.69 5.89 -24.87 -0.15 -0.84 16 20 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 26 H 0.12 1.46 7.97 -51.92 -0.41 1.05 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -36.85 304.96 -8.43 -45.28 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -5.87 Total: -6.48 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -0.51 Total: -20.79 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.00 Total: -26.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 14.34 SS G_CDS: -1.36 Total: 12.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.85 -8.43 -45.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385203220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.673 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds