Wall clock time and date at job start Mon Mar 30 2020 03:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48508 * 109.46671 * 239.99886 * 3 2 1 5 5 H 1.48499 * 109.47329 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47482 * 120.00137 * 3 2 1 7 7 C 1.37878 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99721 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46826 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99816 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46755 * 179.97438 * 11 10 9 13 13 S 1.81401 * 109.46895 * 180.02562 * 12 11 10 14 14 O 1.42103 * 109.46854 * 296.38622 * 13 12 11 15 15 C 1.81398 * 102.99972 * 180.02562 * 13 12 11 16 16 C 1.54894 * 110.75501 * 185.00154 * 15 13 12 17 17 C 1.54266 * 104.31305 * 156.31767 * 16 15 13 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 C 1.54266 * 106.59800 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99621 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46750 * 59.99930 * 9 7 2 22 22 H 1.08998 * 109.46625 * 299.99651 * 9 7 2 23 23 H 1.08991 * 109.47167 * 59.99650 * 11 10 9 24 24 H 1.08994 * 109.46498 * 299.99345 * 11 10 9 25 25 H 1.09000 * 109.47561 * 59.99857 * 12 11 10 26 26 H 1.09003 * 109.47374 * 299.99645 * 12 11 10 27 27 H 1.08993 * 110.82183 * 61.65696 * 15 13 12 28 28 H 1.09002 * 110.48891 * 37.57192 * 16 15 13 29 29 H 1.08998 * 110.48494 * 275.06280 * 16 15 13 30 30 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 31 31 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 32 32 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 33 33 H 1.09003 * 110.03070 * 240.71854 * 18 17 16 34 34 H 1.09005 * 110.48526 * 142.29451 * 19 18 17 35 35 H 1.09007 * 110.48724 * 264.79935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5650 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0020 13 16 1.8679 -7.5939 0.0006 14 8 1.1254 -7.7658 1.2000 15 6 3.2881 -8.7224 0.0025 16 6 2.8203 -10.1935 -0.1247 17 6 4.0414 -10.9327 -0.7100 18 6 4.8867 -9.8749 -1.4409 19 6 4.1496 -8.5300 -1.2748 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5566 0.8903 23 1 0.9458 -4.9826 -0.8893 24 1 0.9440 -4.9823 0.8906 25 1 3.2676 -5.8492 0.8924 26 1 3.2688 -5.8492 -0.8876 27 1 3.8910 -8.5849 0.9000 28 1 1.9696 -10.2662 -0.8023 29 1 2.5628 -10.5979 0.8542 30 1 4.6231 -11.3863 0.0924 31 1 3.7127 -11.6992 -1.4117 32 1 5.8787 -9.8151 -0.9932 33 1 4.9683 -10.1275 -2.4981 34 1 4.8636 -7.7185 -1.1339 35 1 3.5156 -8.3331 -2.1394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385203220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:54 Heat of formation + Delta-G solvation = -133.400484 kcal Electronic energy + Delta-G solvation = -15484.300185 eV Core-core repulsion = 12800.153743 eV Total energy + Delta-G solvation = -2684.146442 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.72304 -38.59420 -36.93004 -35.04183 -32.51389 -29.77552 -29.57892 -29.10742 -24.69396 -24.01989 -21.85635 -21.03809 -18.71414 -18.47804 -17.75672 -17.18803 -16.89036 -16.64920 -16.26046 -15.60055 -15.15299 -14.99250 -14.54947 -14.24454 -14.11691 -13.88422 -13.13830 -12.98209 -12.80348 -12.53022 -12.42768 -12.15708 -12.05449 -12.00460 -11.90253 -11.76252 -11.39393 -11.18416 -11.02289 -10.91510 -10.32668 -9.32900 -8.34832 -6.48722 0.43350 1.39099 1.44257 1.52894 1.60901 2.33193 2.67394 2.98673 3.25942 3.59565 3.70183 3.87898 4.01673 4.05012 4.34685 4.43846 4.53770 4.61912 4.65884 4.69555 4.74118 4.87918 4.92366 4.99427 5.11201 5.15869 5.24825 5.31796 5.36896 5.50917 5.55688 5.90560 6.45531 6.74466 7.23177 8.77415 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051297 B = 0.003772 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.710158 B = 7422.197429 C = 7828.190187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.063 0.937 9 C 0.204 3.796 10 O -0.408 6.408 11 C 0.068 3.932 12 C -0.439 4.439 13 S 1.307 4.693 14 O -0.916 6.916 15 C -0.412 4.412 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.099 4.099 20 H 0.272 0.728 21 H 0.000 1.000 22 H -0.021 1.021 23 H 0.079 0.921 24 H 0.018 0.982 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -21.117 -7.986 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.129 3.871 10 O -0.328 6.328 11 C -0.010 4.010 12 C -0.575 4.575 13 S 1.509 4.491 14 O -0.912 6.912 15 C -0.532 4.532 16 C -0.141 4.141 17 C -0.157 4.157 18 C -0.161 4.161 19 C -0.138 4.138 20 H 0.081 0.919 21 H 0.018 0.982 22 H -0.004 1.004 23 H 0.097 0.903 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.173 0.827 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.774 -21.167 -7.937 23.599 hybrid contribution 1.102 1.165 2.536 3.000 sum 7.876 -20.002 -5.402 22.165 Atomic orbital electron populations 1.70068 1.07839 1.28905 1.50066 1.26018 0.96020 1.03532 0.93678 0.85182 0.78067 0.76383 0.79451 1.18470 1.19838 1.19330 1.21373 0.94209 0.90763 1.52930 0.91827 1.19923 0.88762 0.84620 0.93831 1.87828 1.35586 1.14150 1.95259 1.22068 0.94813 0.83881 1.00248 1.27788 1.07347 1.13307 1.09018 1.69650 0.86244 0.83759 1.09482 1.92990 1.60908 1.83500 1.53792 1.28569 1.12516 1.07481 1.04653 1.22150 0.99942 0.90501 1.01481 1.22127 0.95447 0.98293 0.99851 1.22147 0.98387 0.93856 1.01674 1.22335 0.98166 0.98662 0.94617 0.91875 0.98247 1.00370 0.90322 0.96322 0.91007 0.82710 0.90513 0.88393 0.92961 0.92639 0.89605 0.92416 0.89390 0.90780 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.99 44.61 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.56 -33.82 9.43 25.60 0.24 -33.58 16 8 H 0.06 3.80 7.81 -2.92 -0.02 3.78 16 9 C 0.20 11.86 5.69 71.24 0.41 12.27 16 10 O -0.41 -20.80 10.33 -148.98 -1.54 -22.34 16 11 C 0.07 2.64 5.95 71.98 0.43 3.07 16 12 C -0.44 -12.47 6.07 71.98 0.44 -12.03 16 13 S 1.31 29.08 12.65 -56.49 -0.71 28.37 16 14 O -0.92 -33.90 18.14 -148.98 -2.70 -36.60 16 15 C -0.41 -7.14 3.45 32.02 0.11 -7.03 16 16 C -0.10 -1.51 6.27 31.67 0.20 -1.31 16 17 C -0.12 -1.35 6.80 31.32 0.21 -1.13 16 18 C -0.12 -1.26 6.80 31.32 0.21 -1.05 16 19 C -0.10 -1.13 5.89 31.80 0.19 -0.94 16 20 H 0.27 15.33 8.31 -92.70 -0.77 14.55 16 21 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 22 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 23 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.15 3.33 7.97 -2.39 -0.02 3.31 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.10 1.02 8.04 -2.39 -0.02 1.00 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.11 0.65 8.06 -2.38 -0.02 0.63 16 Total: -1.00 -81.59 304.96 1.29 -80.30 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.04 Total: 0.88 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 2.90 Total: -40.90 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.35 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -4.24 Total: -58.94 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 29.08 SS G_CDS: -0.71 Total: 28.37 kcal Total: -81.59 1.29 -80.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385203220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.096 kcal (2) G-P(sol) polarization free energy of solvation -81.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds