Wall clock time and date at job start Mon Mar 30 2020 03:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99480 * 2 1 4 4 H 1.48498 * 109.47007 * 240.00075 * 3 2 1 5 5 H 1.48501 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46827 * 120.00258 * 3 2 1 7 7 C 1.37874 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99905 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.46881 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99988 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47327 * 179.97438 * 11 10 9 13 13 S 1.81398 * 109.47202 * 179.97438 * 12 11 10 14 14 O 1.42105 * 109.46896 * 63.61498 * 13 12 11 15 15 C 1.81395 * 103.00371 * 180.02562 * 13 12 11 16 16 C 1.54268 * 110.03037 * 302.17037 * 15 13 12 17 17 C 1.54891 * 104.19715 * 217.10264 * 16 15 13 18 18 C 1.54896 * 102.74649 * 37.94023 * 17 16 15 19 19 C 1.53878 * 110.03627 * 185.00300 * 15 13 12 20 20 H 0.96998 * 120.00515 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46885 * 59.99749 * 9 7 2 22 22 H 1.09004 * 109.46802 * 299.99945 * 9 7 2 23 23 H 1.09000 * 109.46879 * 59.99842 * 11 10 9 24 24 H 1.09004 * 109.47071 * 300.00000 * 11 10 9 25 25 H 1.09010 * 109.47163 * 60.00147 * 12 11 10 26 26 H 1.08993 * 109.47558 * 300.00221 * 12 11 10 27 27 H 1.09002 * 110.02006 * 63.60757 * 15 13 12 28 28 H 1.08998 * 110.49123 * 335.78028 * 16 15 13 29 29 H 1.08999 * 110.49118 * 98.42809 * 16 15 13 30 30 H 1.09003 * 110.75691 * 279.62980 * 17 16 15 31 31 H 1.08998 * 110.91868 * 156.33154 * 17 16 15 32 32 H 1.09002 * 110.48450 * 203.38354 * 18 17 16 33 33 H 1.09003 * 110.48219 * 80.73741 * 18 17 16 34 34 H 1.08996 * 110.02845 * 238.56706 * 19 15 13 35 35 H 1.08997 * 110.02685 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7466 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5654 -4.8754 0.0000 12 6 2.6484 -5.9560 -0.0006 13 16 1.8684 -7.5938 0.0009 14 8 1.1259 -7.7658 -1.1985 15 6 3.2886 -8.7222 0.0006 16 6 4.1815 -8.4475 -1.2270 17 6 4.6694 -9.8513 -1.6636 18 6 3.4215 -10.7368 -1.4233 19 6 2.8053 -10.1778 -0.1243 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5571 0.8897 23 1 0.9449 -4.9827 -0.8897 24 1 0.9455 -4.9822 0.8903 25 1 3.2692 -5.8489 0.8889 26 1 3.2679 -5.8491 -0.8910 27 1 3.8645 -8.5974 0.9176 28 1 3.6022 -7.9803 -2.0233 29 1 5.0277 -7.8187 -0.9502 30 1 5.5024 -10.1811 -1.0428 31 1 4.9492 -9.8557 -2.7171 32 1 3.7130 -11.7786 -1.2898 33 1 2.7193 -10.6392 -2.2514 34 1 3.1475 -10.7595 0.7317 35 1 1.7174 -10.2061 -0.1843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385203221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:58 Heat of formation + Delta-G solvation = -106.512936 kcal Electronic energy + Delta-G solvation = -15598.591320 eV Core-core repulsion = 12915.610810 eV Total energy + Delta-G solvation = -2682.980510 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.99818 -36.81309 -35.59468 -32.85521 -30.99065 -29.06279 -28.95262 -26.99707 -22.79459 -22.22092 -20.97367 -20.55647 -17.61444 -16.59826 -16.43791 -15.78842 -15.49896 -15.38068 -14.51848 -14.44160 -13.96854 -13.59818 -13.33967 -13.13490 -12.35722 -12.12682 -11.97080 -11.73320 -11.39231 -11.32809 -11.10734 -11.01340 -10.90287 -10.82481 -10.71167 -10.68154 -10.16249 -9.83907 -9.13921 -8.85896 -8.21102 -8.17832 -6.11763 -4.14187 1.49258 2.60931 3.31633 3.34259 3.38139 3.77135 4.24059 4.34679 4.37083 4.66867 4.93067 5.10231 5.15795 5.19308 5.24186 5.24445 5.43806 5.44399 5.54096 5.63721 5.65394 5.77604 5.81205 5.85692 5.96413 6.08358 6.12893 6.24358 7.08113 7.40648 7.77338 8.12891 8.53796 8.98155 9.50579 10.99699 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.056538 B = 0.003795 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.124496 B = 7377.250749 C = 7660.841604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.393 6.393 11 C 0.084 3.916 12 C -0.440 4.440 13 S 1.247 4.753 14 O -0.842 6.842 15 C -0.419 4.419 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.093 4.093 20 H 0.265 0.735 21 H 0.006 0.994 22 H 0.009 0.991 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 -20.737 3.498 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.118 3.882 10 O -0.313 6.313 11 C 0.005 3.995 12 C -0.577 4.577 13 S 1.445 4.555 14 O -0.837 6.837 15 C -0.536 4.536 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.164 4.164 19 C -0.132 4.132 20 H 0.075 0.925 21 H 0.024 0.976 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.139 0.861 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.211 -20.798 3.484 21.722 hybrid contribution 1.474 1.270 -1.786 2.641 sum 6.684 -19.528 1.699 20.710 Atomic orbital electron populations 1.69951 1.06108 1.27352 1.50271 1.24957 0.94998 0.99446 0.95061 0.86373 0.79301 0.81821 0.78841 1.20036 1.21095 1.19955 1.21016 0.94031 0.89346 1.51224 0.91593 1.20252 0.88826 0.83454 0.95628 1.87877 1.35562 1.12686 1.95224 1.21687 0.92864 0.85165 0.99786 1.27701 1.08462 1.13242 1.08324 1.70460 0.86868 0.85888 1.12305 1.93121 1.56700 1.82661 1.51222 1.28269 1.13861 1.07491 1.03941 1.22419 0.99130 0.98179 0.95902 1.22451 0.97633 0.94751 1.00975 1.22385 0.97311 0.98980 0.97745 1.21760 1.00226 0.92567 0.98648 0.92520 0.97614 0.97365 0.94126 0.93383 0.86064 0.89044 0.85781 0.91709 0.90834 0.91324 0.91688 0.91465 0.91468 0.90651 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -15.53 9.43 -34.44 -0.32 -15.85 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.43 5.69 36.01 0.20 5.63 16 10 O -0.39 -9.80 10.33 -35.23 -0.36 -10.16 16 11 C 0.08 1.60 5.95 37.15 0.22 1.82 16 12 C -0.44 -6.29 5.97 37.15 0.22 -6.07 16 13 S 1.25 13.92 12.26 -107.50 -1.32 12.61 16 14 O -0.84 -14.66 17.88 -35.23 -0.63 -15.29 16 15 C -0.42 -3.78 3.47 -25.61 -0.09 -3.87 16 16 C -0.12 -1.27 5.66 -25.07 -0.14 -1.42 16 17 C -0.12 -1.12 6.91 -24.73 -0.17 -1.29 16 18 C -0.13 -1.16 6.83 -25.07 -0.17 -1.33 16 19 C -0.09 -0.79 6.48 -25.61 -0.17 -0.96 16 20 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.12 1.43 8.14 -51.92 -0.42 1.01 16 26 H 0.09 1.43 7.77 -51.93 -0.40 1.03 16 27 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.58 7.59 -51.93 -0.39 0.19 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -36.55 303.24 -8.35 -44.90 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -5.81 Total: -5.41 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -0.51 Total: -21.78 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.99 Total: -25.45 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 13.92 SS G_CDS: -1.32 Total: 12.61 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.55 -8.35 -44.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385203221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.608 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds