Wall clock time and date at job start Mon Mar 30 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99480 * 2 1 4 4 H 1.48498 * 109.47007 * 240.00075 * 3 2 1 5 5 H 1.48501 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46827 * 120.00258 * 3 2 1 7 7 C 1.37874 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99905 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.46881 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99988 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47327 * 179.97438 * 11 10 9 13 13 S 1.81398 * 109.47202 * 179.97438 * 12 11 10 14 14 O 1.42105 * 109.46896 * 63.61498 * 13 12 11 15 15 C 1.81395 * 103.00371 * 180.02562 * 13 12 11 16 16 C 1.54268 * 110.03037 * 302.17037 * 15 13 12 17 17 C 1.54891 * 104.19715 * 217.10264 * 16 15 13 18 18 C 1.54896 * 102.74649 * 37.94023 * 17 16 15 19 19 C 1.53878 * 110.03627 * 185.00300 * 15 13 12 20 20 H 0.96998 * 120.00515 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46885 * 59.99749 * 9 7 2 22 22 H 1.09004 * 109.46802 * 299.99945 * 9 7 2 23 23 H 1.09000 * 109.46879 * 59.99842 * 11 10 9 24 24 H 1.09004 * 109.47071 * 300.00000 * 11 10 9 25 25 H 1.09010 * 109.47163 * 60.00147 * 12 11 10 26 26 H 1.08993 * 109.47558 * 300.00221 * 12 11 10 27 27 H 1.09002 * 110.02006 * 63.60757 * 15 13 12 28 28 H 1.08998 * 110.49123 * 335.78028 * 16 15 13 29 29 H 1.08999 * 110.49118 * 98.42809 * 16 15 13 30 30 H 1.09003 * 110.75691 * 279.62980 * 17 16 15 31 31 H 1.08998 * 110.91868 * 156.33154 * 17 16 15 32 32 H 1.09002 * 110.48450 * 203.38354 * 18 17 16 33 33 H 1.09003 * 110.48219 * 80.73741 * 18 17 16 34 34 H 1.08996 * 110.02845 * 238.56706 * 19 15 13 35 35 H 1.08997 * 110.02685 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7466 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5654 -4.8754 0.0000 12 6 2.6484 -5.9560 -0.0006 13 16 1.8684 -7.5938 0.0009 14 8 1.1259 -7.7658 -1.1985 15 6 3.2886 -8.7222 0.0006 16 6 4.1815 -8.4475 -1.2270 17 6 4.6694 -9.8513 -1.6636 18 6 3.4215 -10.7368 -1.4233 19 6 2.8053 -10.1778 -0.1243 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5571 0.8897 23 1 0.9449 -4.9827 -0.8897 24 1 0.9455 -4.9822 0.8903 25 1 3.2692 -5.8489 0.8889 26 1 3.2679 -5.8491 -0.8910 27 1 3.8645 -8.5974 0.9176 28 1 3.6022 -7.9803 -2.0233 29 1 5.0277 -7.8187 -0.9502 30 1 5.5024 -10.1811 -1.0428 31 1 4.9492 -9.8557 -2.7171 32 1 3.7130 -11.7786 -1.2898 33 1 2.7193 -10.6392 -2.2514 34 1 3.1475 -10.7595 0.7317 35 1 1.7174 -10.2061 -0.1843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385203221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:57 Heat of formation + Delta-G solvation = -132.869932 kcal Electronic energy + Delta-G solvation = -15599.734245 eV Core-core repulsion = 12915.610810 eV Total energy + Delta-G solvation = -2684.123435 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.74849 -38.71750 -36.82027 -35.04316 -32.51142 -29.88228 -29.72525 -29.11176 -24.68672 -23.97655 -21.75153 -21.34826 -18.72165 -18.54200 -17.86148 -17.04996 -16.96940 -16.57192 -16.30727 -15.67040 -15.14858 -15.07814 -14.69230 -14.32929 -13.90340 -13.49865 -13.24901 -12.98480 -12.82561 -12.54493 -12.50070 -12.36157 -12.10001 -12.07451 -11.99516 -11.80475 -11.57416 -11.38165 -10.94038 -10.90562 -10.32640 -9.21657 -8.35062 -6.49079 0.50603 1.38780 1.44022 1.52656 1.65604 2.33004 2.75274 2.98357 3.28221 3.47874 3.61562 3.90278 3.94854 4.07115 4.35426 4.35665 4.40051 4.57076 4.60500 4.71298 4.74250 4.76275 4.81057 4.93674 5.00608 5.10729 5.10943 5.12302 5.25523 5.37667 5.50639 5.90303 6.45617 6.74368 7.22896 8.77202 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.056538 B = 0.003795 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.124496 B = 7377.250749 C = 7660.841604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.987 3.013 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.204 3.796 10 O -0.408 6.408 11 C 0.068 3.932 12 C -0.440 4.440 13 S 1.304 4.696 14 O -0.908 6.908 15 C -0.408 4.408 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.132 4.132 19 C -0.098 4.098 20 H 0.272 0.728 21 H -0.022 1.022 22 H -0.001 1.001 23 H 0.018 0.982 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.072 0.928 27 H 0.169 0.831 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.111 0.889 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -21.418 5.292 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.129 3.871 10 O -0.328 6.328 11 C -0.010 4.010 12 C -0.575 4.575 13 S 1.503 4.497 14 O -0.904 6.904 15 C -0.527 4.527 16 C -0.168 4.168 17 C -0.157 4.157 18 C -0.170 4.170 19 C -0.137 4.137 20 H 0.081 0.919 21 H -0.004 1.004 22 H 0.016 0.984 23 H 0.036 0.964 24 H 0.095 0.905 25 H 0.172 0.828 26 H 0.091 0.909 27 H 0.187 0.813 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.130 0.870 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.055 -21.476 5.275 23.212 hybrid contribution 0.909 1.314 -2.354 2.845 sum 7.964 -20.161 2.921 21.873 Atomic orbital electron populations 1.70064 1.07849 1.28916 1.50076 1.26023 0.96019 1.03547 0.93672 0.85179 0.78066 0.76364 0.79459 1.19298 1.19833 1.18478 1.21373 0.94204 0.90759 1.52921 0.91823 1.19916 0.88765 0.84672 0.93772 1.87825 1.35585 1.14190 1.95246 1.22070 0.94912 0.83912 1.00080 1.27798 1.07284 1.13418 1.09013 1.69721 0.86673 0.83738 1.09518 1.93006 1.60473 1.83350 1.53590 1.28254 1.12319 1.06908 1.05230 1.22488 0.99393 0.99240 0.95642 1.22489 0.98367 0.93672 1.01167 1.22442 0.96787 1.00430 0.97349 1.21898 0.99928 0.92199 0.99641 0.91873 1.00393 0.98356 0.96416 0.90548 0.82825 0.90865 0.81321 0.95409 0.89759 0.89002 0.92325 0.89242 0.94044 0.87018 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.99 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.56 -33.90 9.43 25.60 0.24 -33.66 16 8 H 0.06 3.81 7.81 -2.91 -0.02 3.79 16 9 C 0.20 11.92 5.69 71.24 0.41 12.33 16 10 O -0.41 -20.88 10.33 -148.98 -1.54 -22.42 16 11 C 0.07 2.66 5.95 71.98 0.43 3.09 16 12 C -0.44 -12.33 5.97 71.98 0.43 -11.90 16 13 S 1.30 28.00 12.26 -56.49 -0.69 27.31 16 14 O -0.91 -32.72 17.88 -148.98 -2.66 -35.38 16 15 C -0.41 -6.20 3.47 31.32 0.11 -6.09 16 16 C -0.13 -2.62 5.66 31.67 0.18 -2.44 16 17 C -0.12 -1.99 6.91 31.89 0.22 -1.77 16 18 C -0.13 -2.19 6.83 31.67 0.22 -1.97 16 19 C -0.10 -1.37 6.48 31.32 0.20 -1.17 16 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 22 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 25 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 26 H 0.07 2.33 7.77 -2.39 -0.02 2.31 16 27 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 0.76 7.60 -2.39 -0.02 0.74 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.93 7.59 -2.39 -0.02 0.91 16 Total: -1.00 -82.15 303.24 1.35 -80.80 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.04 Total: 2.26 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 2.89 Total: -42.77 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.28 Total: -56.53 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -4.20 Total: -57.80 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 28.00 SS G_CDS: -0.69 Total: 27.31 kcal Total: -82.15 1.35 -80.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385203221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.068 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds