Wall clock time and date at job start Mon Mar 30 2020 04:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00433 * 2 1 4 4 H 1.48501 * 109.47449 * 270.00223 * 3 2 1 5 5 H 1.48508 * 109.46934 * 30.00240 * 3 2 1 6 6 H 1.48499 * 109.47441 * 149.99705 * 3 2 1 7 7 C 1.37883 * 119.99423 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00577 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99515 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.46717 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99901 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47345 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47021 * 180.02562 * 12 11 10 14 14 N 1.39877 * 125.46040 * 90.02657 * 13 12 11 15 15 C 1.30244 * 110.08388 * 179.97438 * 14 13 12 16 16 C 1.45927 * 107.78403 * 0.02562 * 15 14 13 17 17 C 1.39943 * 134.02826 * 180.02562 * 16 15 14 18 18 C 1.36468 * 119.63407 * 180.02562 * 17 16 15 19 19 C 1.38965 * 120.62898 * 359.97438 * 18 17 16 20 20 C 1.36589 * 120.81743 * 0.03018 * 19 18 17 21 21 C 1.37034 * 125.46203 * 269.97945 * 13 12 11 22 22 H 0.97009 * 119.99806 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47196 * 60.00034 * 9 7 2 24 24 H 1.08993 * 109.46910 * 299.99564 * 9 7 2 25 25 H 1.09005 * 109.47060 * 60.00001 * 11 10 9 26 26 H 1.08998 * 109.47403 * 300.00443 * 11 10 9 27 27 H 1.09000 * 109.46656 * 60.00114 * 12 11 10 28 28 H 1.09001 * 109.46659 * 299.99970 * 12 11 10 29 29 H 1.07997 * 126.10328 * 179.97438 * 15 14 13 30 30 H 1.08000 * 120.18455 * 0.02562 * 17 16 15 31 31 H 1.07997 * 119.68394 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.59015 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.07475 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.4122 -2.6544 -0.0001 12 6 5.8067 -4.1327 -0.0009 13 7 7.2671 -4.2484 -0.0003 14 7 8.0755 -4.3138 1.1393 15 6 9.3275 -4.4131 0.7944 16 6 9.3893 -4.4161 -0.6635 17 6 10.4326 -4.4985 -1.5926 18 6 10.1508 -4.4736 -2.9277 19 6 8.8385 -4.3678 -3.3724 20 6 7.8033 -4.2859 -2.4850 21 6 8.0601 -4.3109 -1.1162 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6810 0.8905 24 1 3.8751 -0.6799 -0.8894 25 1 5.8150 -2.1709 0.8899 26 1 5.8150 -2.1708 -0.8900 27 1 5.4039 -4.6157 -0.8912 28 1 5.4039 -4.6166 0.8889 29 1 10.1695 -4.4803 1.4673 30 1 11.4551 -4.5813 -1.2550 31 1 10.9553 -4.5367 -3.6454 32 1 8.6346 -4.3492 -4.4328 33 1 6.7881 -4.2037 -2.8438 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385270143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:40 Heat of formation + Delta-G solvation = 42.689493 kcal Electronic energy + Delta-G solvation = -16627.314704 eV Core-core repulsion = 13847.652896 eV Total energy + Delta-G solvation = -2779.661808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34309 -37.51760 -37.02053 -33.90390 -32.64877 -30.88518 -29.94852 -28.74570 -27.20421 -23.27107 -23.14923 -22.02020 -21.93728 -20.45317 -17.30605 -17.00138 -16.98323 -15.68490 -15.41370 -15.31959 -15.18462 -14.37061 -14.26620 -13.94936 -13.58745 -13.23688 -12.89750 -12.52605 -12.08638 -11.98279 -11.41003 -11.23655 -11.14565 -10.97574 -10.88026 -10.70478 -10.10464 -9.93645 -9.28681 -8.99542 -8.80572 -8.58356 -7.99709 -6.17828 -4.17873 0.83519 1.38877 2.25186 2.42749 3.20727 3.28100 3.29628 3.67025 4.27602 4.30367 4.45837 4.61188 4.67641 4.84212 5.06908 5.13302 5.16653 5.23270 5.39655 5.46509 5.51396 5.67085 5.80510 5.91832 5.96835 6.21771 6.37089 6.38691 6.49582 6.70056 6.89454 6.96743 7.49958 7.56376 7.85183 8.54773 8.92104 9.40520 10.94953 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034781 B = 0.004291 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.851767 B = 6523.577307 C = 6745.331418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.084 0.916 9 C 0.172 3.828 10 O -0.378 6.378 11 C 0.046 3.954 12 C 0.143 3.857 13 N -0.396 5.396 14 N -0.246 5.246 15 C 0.066 3.934 16 C -0.185 4.185 17 C -0.042 4.042 18 C -0.164 4.164 19 C -0.072 4.072 20 C -0.137 4.137 21 C 0.130 3.870 22 H 0.268 0.732 23 H 0.005 0.995 24 H 0.000 1.000 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.196 0.804 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.808 -8.689 -4.307 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.102 0.898 9 C 0.097 3.903 10 O -0.297 6.297 11 C -0.033 4.033 12 C 0.021 3.979 13 N -0.185 5.185 14 N -0.058 5.058 15 C -0.132 4.132 16 C -0.193 4.193 17 C -0.063 4.063 18 C -0.183 4.183 19 C -0.093 4.093 20 C -0.159 4.159 21 C 0.015 3.985 22 H 0.078 0.922 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.212 0.788 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.453 -8.636 -3.286 22.444 hybrid contribution 1.002 1.223 -0.642 1.707 sum 21.456 -7.413 -3.928 23.038 Atomic orbital electron populations 1.69869 1.06041 1.27221 1.49946 1.24746 0.94813 0.98743 0.94482 0.86861 0.80370 0.83745 0.78866 1.19819 1.20590 1.19140 1.20857 0.87995 0.95469 1.51749 0.89811 1.20651 0.96277 0.78785 0.94626 1.87843 1.16238 1.30391 1.95184 1.22588 0.85581 0.94848 1.00317 1.21428 0.73200 0.97709 1.05535 1.48322 1.06116 1.63139 1.00924 1.76651 1.02701 1.17150 1.09260 1.25073 0.94782 1.00337 0.92983 1.19955 0.93158 1.12717 0.93476 1.20316 0.97557 0.96350 0.92047 1.20651 0.96711 1.05549 0.95436 1.20730 0.92219 0.96966 0.99401 1.19954 1.00520 1.06429 0.88978 1.18897 0.90762 0.99117 0.89725 0.92233 0.97703 0.98185 0.93480 0.93953 0.88225 0.87850 0.78756 0.85614 0.85787 0.85385 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.53 9.99 -34.44 -0.34 -15.88 16 8 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.17 4.39 4.76 36.01 0.17 4.57 16 10 O -0.38 -8.75 10.33 -35.23 -0.36 -9.12 16 11 C 0.05 0.83 6.26 37.16 0.23 1.07 16 12 C 0.14 2.17 6.74 -4.04 -0.03 2.14 16 13 N -0.40 -5.95 3.65 -58.71 -0.21 -6.16 16 14 N -0.25 -3.62 12.40 31.87 0.40 -3.23 16 15 C 0.07 0.76 12.28 -15.15 -0.19 0.57 16 16 C -0.19 -2.24 6.37 -105.21 -0.67 -2.91 16 17 C -0.04 -0.40 10.07 -39.58 -0.40 -0.80 16 18 C -0.16 -1.47 9.97 -39.95 -0.40 -1.86 16 19 C -0.07 -0.71 9.96 -39.91 -0.40 -1.10 16 20 C -0.14 -1.63 9.97 -39.79 -0.40 -2.03 16 21 C 0.13 1.79 6.87 -84.18 -0.58 1.21 16 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.01 0.13 7.20 -51.93 -0.37 -0.24 16 24 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -33.35 291.24 -6.94 -40.29 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -4.16 Total: -3.32 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.09 Total: -12.94 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.95 Total: -36.04 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.36 Total: -9.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.35 -6.94 -40.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.975 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds