Wall clock time and date at job start Mon Mar 30 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39255 * 120.58574 * 13.32279 * 3 2 1 5 5 C 1.39552 * 118.96958 * 179.97438 * 4 3 2 6 6 C 1.35691 * 120.13702 * 359.97438 * 5 4 3 7 7 N 1.35519 * 121.22316 * 0.26306 * 6 5 4 8 8 C 1.46497 * 119.47405 * 179.71705 * 7 6 5 9 9 C 1.53005 * 109.47108 * 90.00436 * 8 7 6 10 10 C 1.52996 * 109.47198 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47084 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99651 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00163 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99615 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47313 * 59.99762 * 16 14 12 18 18 H 1.48499 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47213 * 299.99883 * 16 14 12 20 20 C 1.34657 * 121.04604 * 359.47384 * 7 6 5 21 21 O 1.21904 * 120.10438 * 180.23692 * 20 7 6 22 22 H 1.08000 * 120.51475 * 359.97438 * 4 3 2 23 23 H 1.08003 * 119.93284 * 180.02562 * 5 4 3 24 24 H 1.08002 * 119.38566 * 179.97438 * 6 5 4 25 25 H 1.09005 * 109.47074 * 209.99576 * 8 7 6 26 26 H 1.08996 * 109.47384 * 330.00167 * 8 7 6 27 27 H 1.09005 * 109.46451 * 299.99522 * 9 8 7 28 28 H 1.08995 * 109.47089 * 59.99094 * 9 8 7 29 29 H 1.08993 * 109.47303 * 299.99683 * 10 9 8 30 30 H 1.09005 * 109.47250 * 60.00079 * 10 9 8 31 31 H 1.09005 * 109.46955 * 300.00033 * 11 10 9 32 32 H 1.08996 * 109.46828 * 60.00210 * 11 10 9 33 33 H 0.97000 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2771 -1.1656 -0.2762 5 6 4.6720 -1.1265 -0.2677 6 6 5.3194 0.0341 0.0060 7 7 4.6361 1.1718 0.2804 8 6 5.3740 2.4022 0.5768 9 6 5.6305 3.1686 -0.7224 10 6 6.4005 4.4539 -0.4128 11 6 6.6575 5.2199 -1.7121 12 6 7.4166 6.4856 -1.4072 13 1 7.6889 6.7199 -0.3887 14 6 7.7635 7.3444 -2.4285 15 7 7.4323 7.0588 -3.6688 16 14 8.7038 8.9136 -2.0506 17 1 10.0007 8.5722 -1.4129 18 1 8.9533 9.6571 -3.3116 19 1 7.9054 9.7588 -1.1268 20 6 3.2896 1.1904 0.2802 21 8 2.6924 2.2245 0.5252 22 1 2.7556 -2.0860 -0.4937 23 1 5.2375 -2.0218 -0.4802 24 1 6.3993 0.0505 0.0098 25 1 4.7882 3.0227 1.2550 26 1 6.3260 2.1512 1.0446 27 1 6.2162 2.5480 -1.4006 28 1 4.6785 3.4195 -1.1902 29 1 5.8145 5.0742 0.2653 30 1 7.3526 4.2032 0.0552 31 1 7.2438 4.5994 -2.3899 32 1 5.7057 5.4705 -2.1804 33 1 7.6760 7.6631 -4.3873 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385274962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:43 Heat of formation + Delta-G solvation = 8.106771 kcal Electronic energy + Delta-G solvation = -16445.242922 eV Core-core repulsion = 13664.081495 eV Total energy + Delta-G solvation = -2781.161427 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64333 -37.28662 -36.87819 -35.62857 -33.97793 -32.24016 -30.48289 -28.97360 -25.74977 -25.01744 -23.30635 -21.86482 -20.26424 -19.45619 -17.77711 -17.23183 -16.37946 -15.98329 -15.68373 -14.89851 -14.76852 -14.47009 -13.69917 -13.65027 -13.17440 -12.94774 -12.70905 -12.53325 -12.34041 -12.25390 -11.94509 -11.78626 -11.07522 -10.72051 -10.71207 -10.64719 -10.29250 -10.15030 -9.77348 -9.37459 -9.11065 -8.37275 -8.25296 -6.02251 -4.05180 0.10937 1.55735 2.17605 2.71950 2.80981 3.31694 3.36513 3.38633 3.64588 3.84750 4.26932 4.32040 4.43775 4.59666 4.77576 4.98670 5.10315 5.33538 5.36525 5.43042 5.57450 5.69083 5.83320 5.92282 6.19498 6.25732 6.57710 6.74273 6.76347 7.04180 7.50332 7.63183 7.76861 7.77017 7.96981 8.38741 9.01736 9.59169 11.09037 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038994 B = 0.003806 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.879244 B = 7354.656298 C = 7649.056537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.282 3.718 3 C -0.178 4.178 4 C 0.058 3.942 5 C -0.253 4.253 6 C 0.183 3.817 7 N -0.484 5.484 8 C 0.084 3.916 9 C -0.132 4.132 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.533 3.467 21 O -0.527 6.527 22 H 0.144 0.856 23 H 0.156 0.844 24 H 0.172 0.828 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -19.488 7.560 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.033 4.033 3 C -0.186 4.186 4 C 0.032 3.968 5 C -0.276 4.276 6 C 0.050 3.950 7 N -0.191 5.191 8 C -0.036 4.036 9 C -0.171 4.171 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.332 3.668 21 O -0.406 6.406 22 H 0.162 0.838 23 H 0.174 0.826 24 H 0.189 0.811 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.731 -18.634 7.572 20.298 hybrid contribution 1.068 0.843 -0.008 1.361 sum -1.662 -17.791 7.564 19.403 Atomic orbital electron populations 1.81203 1.11744 1.07249 1.10015 1.24749 0.91648 0.93642 0.93283 1.16819 0.86196 0.95319 1.20232 1.21870 0.94056 0.96398 0.84487 1.20557 0.93890 0.98750 1.14425 1.22411 0.99407 0.84991 0.88147 1.45781 1.08045 1.11183 1.54047 1.22469 0.96535 0.83731 1.00880 1.22050 1.02038 0.98167 0.94801 1.21576 0.97863 0.93562 1.01485 1.19083 0.96890 0.94407 0.91170 1.21212 1.35824 1.05679 0.93440 0.92703 1.25029 0.96109 0.98217 0.95096 1.69953 1.46823 1.37423 0.99254 0.86653 0.80363 0.83399 0.77555 1.20241 1.21281 1.20207 1.16648 0.80911 0.89296 0.79981 1.91006 1.66602 1.32929 1.50040 0.83796 0.82603 0.81069 0.87771 0.88539 0.91769 0.91317 0.92871 0.93048 0.96631 0.96551 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.85 18.54 41.84 0.78 -6.07 16 2 C 0.28 3.95 14.94 -22.47 -0.34 3.61 16 3 C -0.18 -2.01 5.79 -106.17 -0.62 -2.63 16 4 C 0.06 0.38 9.88 -38.71 -0.38 0.00 16 5 C -0.25 -1.18 9.99 -40.00 -0.40 -1.58 16 6 C 0.18 1.09 10.25 -16.83 -0.17 0.91 16 7 N -0.48 -4.99 2.58 -119.31 -0.31 -5.30 16 8 C 0.08 0.94 5.31 -4.04 -0.02 0.92 16 9 C -0.13 -1.98 5.54 -26.73 -0.15 -2.13 16 10 C -0.11 -2.00 5.15 -26.73 -0.14 -2.14 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.53 7.28 7.43 -14.89 -0.11 7.17 16 21 O -0.53 -9.65 16.09 5.01 0.08 -9.57 16 22 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 23 H 0.16 0.23 8.06 -52.48 -0.42 -0.19 16 24 H 0.17 0.42 8.02 -52.49 -0.42 0.00 16 25 H 0.10 1.34 7.39 -51.93 -0.38 0.96 16 26 H 0.10 0.76 8.00 -51.93 -0.42 0.34 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -35.69 299.61 -6.24 -41.93 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -4.14 Total: -7.04 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.87 Total: -8.84 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 1.20 Total: -37.43 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.69 -6.24 -41.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385274962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.033 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds