Wall clock time and date at job start Mon Mar 30 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39255 * 120.58574 * 13.32279 * 3 2 1 5 5 C 1.39552 * 118.96958 * 179.97438 * 4 3 2 6 6 C 1.35691 * 120.13702 * 359.97438 * 5 4 3 7 7 N 1.35519 * 121.22316 * 0.26306 * 6 5 4 8 8 C 1.46497 * 119.47405 * 179.71705 * 7 6 5 9 9 C 1.53005 * 109.47108 * 90.00436 * 8 7 6 10 10 C 1.52996 * 109.47198 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47084 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99651 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00163 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99615 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47313 * 59.99762 * 16 14 12 18 18 H 1.48499 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47213 * 299.99883 * 16 14 12 20 20 C 1.34657 * 121.04604 * 359.47384 * 7 6 5 21 21 O 1.21904 * 120.10438 * 180.23692 * 20 7 6 22 22 H 1.08000 * 120.51475 * 359.97438 * 4 3 2 23 23 H 1.08003 * 119.93284 * 180.02562 * 5 4 3 24 24 H 1.08002 * 119.38566 * 179.97438 * 6 5 4 25 25 H 1.09005 * 109.47074 * 209.99576 * 8 7 6 26 26 H 1.08996 * 109.47384 * 330.00167 * 8 7 6 27 27 H 1.09005 * 109.46451 * 299.99522 * 9 8 7 28 28 H 1.08995 * 109.47089 * 59.99094 * 9 8 7 29 29 H 1.08993 * 109.47303 * 299.99683 * 10 9 8 30 30 H 1.09005 * 109.47250 * 60.00079 * 10 9 8 31 31 H 1.09005 * 109.46955 * 300.00033 * 11 10 9 32 32 H 1.08996 * 109.46828 * 60.00210 * 11 10 9 33 33 H 0.97000 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2771 -1.1656 -0.2762 5 6 4.6720 -1.1265 -0.2677 6 6 5.3194 0.0341 0.0060 7 7 4.6361 1.1718 0.2804 8 6 5.3740 2.4022 0.5768 9 6 5.6305 3.1686 -0.7224 10 6 6.4005 4.4539 -0.4128 11 6 6.6575 5.2199 -1.7121 12 6 7.4166 6.4856 -1.4072 13 1 7.6889 6.7199 -0.3887 14 6 7.7635 7.3444 -2.4285 15 7 7.4323 7.0588 -3.6688 16 14 8.7038 8.9136 -2.0506 17 1 10.0007 8.5722 -1.4129 18 1 8.9533 9.6571 -3.3116 19 1 7.9054 9.7588 -1.1268 20 6 3.2896 1.1904 0.2802 21 8 2.6924 2.2245 0.5252 22 1 2.7556 -2.0860 -0.4937 23 1 5.2375 -2.0218 -0.4802 24 1 6.3993 0.0505 0.0098 25 1 4.7882 3.0227 1.2550 26 1 6.3260 2.1512 1.0446 27 1 6.2162 2.5480 -1.4006 28 1 4.6785 3.4195 -1.1902 29 1 5.8145 5.0742 0.2653 30 1 7.3526 4.2032 0.0552 31 1 7.2438 4.5994 -2.3899 32 1 5.7057 5.4705 -2.1804 33 1 7.6760 7.6631 -4.3873 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385274962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:43 Heat of formation + Delta-G solvation = -15.481240 kcal Electronic energy + Delta-G solvation = -16446.265775 eV Core-core repulsion = 13664.081495 eV Total energy + Delta-G solvation = -2782.184280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.45303 -38.25126 -37.85800 -36.89267 -35.42728 -33.94019 -31.26659 -30.46498 -27.18149 -25.86478 -24.62181 -22.99296 -21.86563 -20.31961 -18.55708 -18.44328 -17.91943 -16.93586 -16.69631 -16.38147 -16.19264 -15.46125 -14.80773 -14.57276 -14.44023 -14.22409 -13.86751 -13.81279 -13.76056 -13.36936 -13.01930 -12.86084 -12.80314 -12.40978 -12.31611 -12.16746 -11.48226 -11.41481 -11.28450 -11.10459 -10.82777 -10.54391 -9.03895 -8.19531 -6.30863 -0.52023 0.86809 1.29464 1.40763 1.43889 1.51613 1.81678 1.88772 2.41690 2.78808 3.03940 3.13864 3.61974 3.84579 3.96205 4.00930 4.05114 4.31929 4.35955 4.51268 4.69623 4.81788 4.88771 5.02716 5.11040 5.21902 5.27074 5.31164 5.54256 5.60051 5.76682 5.87345 5.98951 6.25237 6.50899 6.87220 6.88299 7.38854 8.92118 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038994 B = 0.003806 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.879244 B = 7354.656298 C = 7649.056537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.297 3.703 3 C -0.228 4.228 4 C 0.094 3.906 5 C -0.233 4.233 6 C 0.187 3.813 7 N -0.485 5.485 8 C 0.094 3.906 9 C -0.121 4.121 10 C -0.095 4.095 11 C 0.021 3.979 12 C -0.544 4.544 13 H 0.064 0.936 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.519 3.481 21 O -0.599 6.599 22 H 0.179 0.821 23 H 0.208 0.792 24 H 0.221 0.779 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.077 0.923 31 H -0.001 1.001 32 H -0.023 1.023 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -21.965 8.467 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.069 3.931 5 C -0.254 4.254 6 C 0.056 3.944 7 N -0.190 5.190 8 C -0.027 4.027 9 C -0.160 4.160 10 C -0.133 4.133 11 C -0.016 4.016 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.789 3.211 17 H -0.185 1.185 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.321 3.679 21 O -0.484 6.484 22 H 0.196 0.804 23 H 0.224 0.776 24 H 0.238 0.762 25 H 0.098 0.902 26 H 0.165 0.835 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.018 0.982 32 H -0.005 1.005 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.646 -21.168 8.485 22.814 hybrid contribution 0.177 1.484 -0.349 1.535 sum 0.823 -19.684 8.136 21.315 Atomic orbital electron populations 1.81180 1.13311 1.08970 1.12828 1.25344 0.92419 0.92153 0.91672 1.16824 0.84824 0.96562 1.25420 1.22399 0.95136 0.95555 0.80017 1.21236 0.92892 0.99921 1.11355 1.23421 1.01631 0.83525 0.85824 1.45667 1.07012 1.12331 1.54035 1.22281 0.98330 0.83941 0.98103 1.21830 0.99679 0.97275 0.97174 1.21354 0.99573 0.94519 0.97836 1.19029 0.94236 0.94495 0.93833 1.21734 1.35797 1.06784 0.93920 0.91817 1.26011 0.97161 1.02014 0.94866 1.70098 1.48203 1.38909 1.00369 0.85509 0.79363 0.78772 0.77465 1.18517 1.21073 1.19595 1.17057 0.82094 0.89121 0.79598 1.90956 1.68245 1.35312 1.53932 0.80382 0.77557 0.76232 0.90160 0.83497 0.89912 0.95184 0.93827 0.90426 0.98228 1.00505 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -16.69 18.54 19.00 0.35 -16.34 16 2 C 0.30 8.78 14.94 88.33 1.32 10.10 16 3 C -0.23 -5.07 5.79 -20.87 -0.12 -5.19 16 4 C 0.09 0.86 9.88 22.83 0.23 1.09 16 5 C -0.23 -0.68 9.99 22.00 0.22 -0.46 16 6 C 0.19 1.16 10.25 83.53 0.86 2.02 16 7 N -0.49 -8.90 2.58 -649.59 -1.67 -10.58 16 8 C 0.09 1.92 5.31 86.38 0.46 2.38 16 9 C -0.12 -3.57 5.54 30.59 0.17 -3.40 16 10 C -0.09 -3.53 5.15 30.59 0.16 -3.37 16 11 C 0.02 1.10 4.97 29.85 0.15 1.24 16 12 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 14 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 15 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 16 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.52 14.45 7.43 85.18 0.63 15.09 16 21 O -0.60 -23.85 16.09 -5.00 -0.08 -23.93 16 22 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 23 H 0.21 -1.25 8.06 -2.91 -0.02 -1.27 16 24 H 0.22 -0.71 8.02 -2.91 -0.02 -0.73 16 25 H 0.08 2.09 7.39 -2.38 -0.02 2.07 16 26 H 0.15 1.55 8.00 -2.39 -0.02 1.54 16 27 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -87.39 299.61 6.78 -80.61 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: 1.10 Total: -8.22 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.76 Total: -10.58 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.04 Total: -83.84 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.08 Total: -23.93 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -87.39 6.78 -80.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385274962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.128 kcal (2) G-P(sol) polarization free energy of solvation -87.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds