Wall clock time and date at job start Mon Mar 30 2020 04:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 120.20635 * 80.55612 * 3 2 1 5 5 C 1.37796 * 119.91802 * 180.02562 * 4 3 2 6 6 C 1.38572 * 120.34678 * 359.97438 * 5 4 3 7 7 C 1.38015 * 120.42133 * 0.02562 * 6 5 4 8 8 C 1.38888 * 120.06689 * 359.71253 * 7 6 5 9 9 N 1.39032 * 120.16830 * 180.28227 * 8 7 6 10 10 C 1.46501 * 120.00281 * 0.28304 * 9 8 7 11 11 C 1.52994 * 109.47106 * 179.97438 * 10 9 8 12 12 O 1.42906 * 109.47348 * 64.99816 * 11 10 9 13 13 C 1.42901 * 114.00037 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46967 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99747 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00312 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00322 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99602 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47100 * 90.00131 * 18 16 14 20 20 H 1.48501 * 109.46991 * 209.99802 * 18 16 14 21 21 H 1.48500 * 109.47067 * 329.99742 * 18 16 14 22 22 H 1.08001 * 120.04427 * 359.97438 * 4 3 2 23 23 H 1.08008 * 119.82908 * 179.97438 * 5 4 3 24 24 H 1.07996 * 119.78644 * 179.97438 * 6 5 4 25 25 H 1.08000 * 119.96312 * 180.02562 * 7 6 5 26 26 H 0.97004 * 120.00087 * 180.27617 * 9 8 7 27 27 H 1.08998 * 109.46715 * 299.99546 * 10 9 8 28 28 H 1.08996 * 109.46917 * 59.99467 * 10 9 8 29 29 H 1.09000 * 109.47181 * 184.99852 * 11 10 9 30 30 H 1.09000 * 109.47465 * 304.99339 * 11 10 9 31 31 H 1.08996 * 109.46982 * 299.99836 * 13 12 11 32 32 H 1.09000 * 109.47205 * 60.00197 * 13 12 11 33 33 H 0.97006 * 120.00211 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.1972 -1.1911 5 6 4.6490 -0.1959 -1.1842 6 6 5.3430 0.0012 -0.0011 7 6 4.6628 0.1979 1.1836 8 6 3.2740 0.2054 1.1957 9 7 2.5868 0.4093 2.3870 10 6 3.3275 0.6231 3.6327 11 6 2.3409 0.8208 4.7852 12 8 1.5985 -0.3832 4.9886 13 6 0.6438 -0.3052 6.0491 14 6 -0.0767 -1.6229 6.1742 15 1 0.1696 -2.4382 5.5100 16 6 -1.0509 -1.7874 7.1359 17 7 -1.6800 -2.9371 7.2447 18 14 -1.4773 -0.3769 8.2842 19 1 -2.5602 0.4416 7.6819 20 1 -1.9349 -0.9211 9.5879 21 1 -0.2758 0.4698 8.4955 22 1 2.7352 -0.3517 -2.1160 23 1 5.1910 -0.3494 -2.1057 24 1 6.4229 0.0000 -0.0060 25 1 5.2112 0.3512 2.1013 26 1 1.6167 0.4101 2.3933 27 1 3.9548 -0.2449 3.8359 28 1 3.9542 1.5095 3.5352 29 1 2.8890 1.0677 5.6944 30 1 1.6561 1.6332 4.5420 31 1 1.1571 -0.0820 6.9843 32 1 -0.0763 0.4839 5.8324 33 1 -2.3652 -3.0529 7.9216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385823595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:56 Heat of formation + Delta-G solvation = 6.535795 kcal Electronic energy + Delta-G solvation = -16459.759105 eV Core-core repulsion = 13678.529555 eV Total energy + Delta-G solvation = -2781.229550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81717 -37.45025 -36.25024 -35.46712 -32.72581 -31.44968 -30.70299 -28.38281 -27.17914 -24.03294 -22.90029 -21.96040 -21.25434 -18.95133 -17.22583 -16.97759 -16.28038 -15.95831 -15.21730 -14.70110 -14.57556 -14.31621 -14.12719 -13.86890 -13.41069 -13.06310 -12.90464 -12.69524 -12.47356 -12.28692 -11.86236 -11.66258 -11.21867 -11.14678 -10.86162 -10.73417 -10.27416 -9.92877 -9.27951 -9.05754 -9.00922 -8.58585 -7.54674 -6.16984 -4.17187 0.84612 1.46428 2.79171 3.04792 3.20187 3.26825 3.27433 3.30840 3.91671 4.03421 4.29554 4.38600 4.71753 4.87364 5.03958 5.13820 5.18834 5.30060 5.32127 5.44409 5.66595 5.67628 5.76492 5.90899 6.03754 6.20658 6.39857 6.46367 6.63451 6.87827 7.13120 7.50260 7.54724 7.67283 7.85907 8.55639 8.93598 9.41083 10.95978 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031558 B = 0.004508 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.053915 B = 6209.866493 C = 6674.335566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.253 3.747 3 C -0.119 4.119 4 C -0.021 4.021 5 C -0.191 4.191 6 C -0.041 4.041 7 C -0.204 4.204 8 C 0.273 3.727 9 N -0.723 5.723 10 C 0.124 3.876 11 C 0.042 3.958 12 O -0.379 6.379 13 C 0.170 3.830 14 C -0.523 4.523 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.893 5.893 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.267 1.267 22 H 0.128 0.872 23 H 0.125 0.875 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.408 0.592 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.005 0.995 32 H -0.001 1.001 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.968 9.607 -12.950 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.061 4.061 3 C -0.128 4.128 4 C -0.042 4.042 5 C -0.212 4.212 6 C -0.060 4.060 7 C -0.227 4.227 8 C 0.161 3.839 9 N -0.348 5.348 10 C 0.000 4.000 11 C -0.036 4.036 12 O -0.298 6.298 13 C 0.095 3.905 14 C -0.561 4.561 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.191 1.191 22 H 0.146 0.854 23 H 0.143 0.857 24 H 0.144 0.856 25 H 0.149 0.851 26 H 0.244 0.756 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.016 0.984 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.175 9.372 -12.702 21.216 hybrid contribution -0.365 0.851 0.933 1.314 sum 13.811 10.222 -11.770 20.827 Atomic orbital electron populations 1.81296 1.11995 1.10149 1.06610 1.25623 0.92607 0.93511 0.94367 1.15516 0.84181 1.18923 0.94212 1.20890 0.94202 0.93541 0.95563 1.20759 0.93433 1.08443 0.98547 1.21084 0.99813 0.93319 0.91808 1.20610 0.91226 1.11256 0.99584 1.17796 0.91608 0.89657 0.84845 1.44862 1.09355 1.75893 1.04716 1.21549 0.94538 1.01492 0.82376 1.22575 0.94422 0.89981 0.96595 1.87960 1.53627 1.32115 1.56099 1.20633 0.86716 0.98347 0.84844 1.20857 1.19244 0.97439 1.18524 0.89971 1.24763 0.95378 0.95839 0.96871 1.69869 1.24917 1.23714 1.34566 0.86851 0.79293 0.82755 0.80834 1.19898 1.20645 1.19130 0.85429 0.85667 0.85629 0.85149 0.75559 0.90622 0.90683 0.92269 0.93648 0.97710 0.98355 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.48 18.54 41.83 0.78 -6.70 16 2 C 0.25 3.80 14.09 -22.47 -0.32 3.49 16 3 C -0.12 -1.46 5.76 -106.62 -0.61 -2.08 16 4 C -0.02 -0.20 9.75 -39.19 -0.38 -0.58 16 5 C -0.19 -1.52 10.02 -39.62 -0.40 -1.92 16 6 C -0.04 -0.32 10.03 -39.54 -0.40 -0.72 16 7 C -0.20 -1.97 9.29 -39.42 -0.37 -2.34 16 8 C 0.27 3.32 6.66 -83.56 -0.56 2.76 16 9 N -0.72 -9.95 5.58 -58.42 -0.33 -10.28 16 10 C 0.12 1.53 5.29 -4.04 -0.02 1.51 16 11 C 0.04 0.66 6.07 37.15 0.23 0.88 16 12 O -0.38 -8.39 10.27 -35.23 -0.36 -8.75 16 13 C 0.17 4.23 4.76 36.00 0.17 4.40 16 14 C -0.52 -15.57 9.99 -34.44 -0.34 -15.91 16 15 H 0.08 2.70 8.06 -52.48 -0.42 2.27 16 16 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -27.72 13.96 55.43 0.77 -26.94 16 18 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 22 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 23 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 24 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 25 H 0.13 1.07 6.72 -52.49 -0.35 0.71 16 26 H 0.41 6.48 7.33 -40.82 -0.30 6.18 16 27 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 28 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.01 0.13 7.20 -51.93 -0.37 -0.25 16 32 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 33 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -33.46 295.29 -6.40 -39.86 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -3.95 Total: 0.13 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.09 Total: -8.43 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.22 Total: -43.92 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.36 Total: -8.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.46 -6.40 -39.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385823595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.391 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds