Wall clock time and date at job start Mon Mar 30 2020 03:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35577 * 117.00132 * 2 1 4 4 N 1.32176 * 119.77584 * 0.22429 * 3 2 1 5 5 C 1.31953 * 121.77859 * 180.26327 * 4 3 2 6 6 C 1.38232 * 121.11228 * 359.77344 * 5 4 3 7 7 C 1.38510 * 119.41957 * 359.97438 * 6 5 4 8 8 C 1.39627 * 118.37142 * 359.97438 * 7 6 5 9 9 C 1.48237 * 120.56585 * 179.97438 * 8 7 6 10 10 N 1.32120 * 125.68157 * 180.27630 * 9 8 7 11 11 N 1.28849 * 109.19133 * 180.15813 * 10 9 8 12 12 H 0.97001 * 125.98554 * 179.87643 * 11 10 9 13 13 C 1.36974 * 108.03275 * 359.60673 * 11 10 9 14 14 C 1.40311 * 126.54427 * 180.27881 * 13 11 10 15 15 H 1.07994 * 120.00433 * 359.97438 * 14 13 11 16 16 C 1.40224 * 119.99516 * 180.02562 * 14 13 11 17 17 N 1.30661 * 120.00411 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99615 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47218 * 89.99842 * 18 16 14 20 20 H 1.48506 * 109.47069 * 209.99737 * 18 16 14 21 21 H 1.48495 * 109.47501 * 329.99806 * 18 16 14 22 22 N 1.33332 * 106.90293 * 0.23938 * 13 11 10 23 23 H 1.08999 * 109.47411 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46887 * 300.00069 * 1 2 3 25 25 H 1.09005 * 109.47051 * 59.99993 * 1 2 3 26 26 H 1.07991 * 119.44053 * 179.75131 * 5 4 3 27 27 H 1.08002 * 120.28690 * 179.97438 * 6 5 4 28 28 H 1.07995 * 120.81028 * 179.97438 * 7 6 5 29 29 H 0.97001 * 120.00399 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3203 2.3137 0.0045 5 6 1.8779 3.5096 -0.0005 6 6 3.2524 3.6569 -0.0060 7 6 4.0574 2.5297 -0.0057 8 6 3.4432 1.2758 0.0007 9 6 4.2580 0.0374 0.0006 10 7 3.7849 -1.1963 0.0012 11 7 4.7695 -2.0274 0.0043 12 1 4.6987 -2.9948 0.0071 13 6 5.9337 -1.3057 -0.0030 14 6 7.2377 -1.8236 -0.0081 15 1 7.3944 -2.8921 -0.0060 16 6 8.3375 -0.9537 -0.0150 17 7 8.1479 0.3391 -0.0171 18 14 10.0736 -1.6431 -0.0211 19 1 10.5275 -1.8291 -1.4228 20 1 10.9842 -0.6972 0.6728 21 1 10.0893 -2.9510 0.6819 22 7 5.5910 -0.0172 -0.0053 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.2499 4.3881 -0.0006 27 1 3.6946 4.6422 -0.0104 28 1 5.1337 2.6186 -0.0104 29 1 8.9087 0.9409 -0.0222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390662456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:24 Heat of formation + Delta-G solvation = 77.436185 kcal Electronic energy + Delta-G solvation = -17054.491204 eV Core-core repulsion = 14172.795782 eV Total energy + Delta-G solvation = -2881.695422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.95434 -39.88249 -37.29248 -33.68039 -32.78849 -30.95040 -30.37820 -29.07634 -26.83093 -25.75754 -23.56084 -22.40401 -20.61643 -19.79505 -17.81274 -17.47581 -16.51419 -15.92572 -15.51278 -15.04207 -14.70324 -14.05936 -14.05593 -13.63969 -12.95881 -12.93614 -12.53980 -11.86555 -11.69094 -11.28726 -11.26379 -10.82962 -10.78620 -10.39599 -9.83239 -9.81526 -9.48432 -9.25750 -8.66824 -8.07550 -8.06517 -7.29743 -6.58234 -4.59976 1.47044 1.80108 2.98344 3.09671 3.12260 3.61368 3.62396 3.93080 4.14244 4.54826 4.71544 4.78658 5.34645 5.38946 5.43230 5.47196 5.58126 5.61367 5.79951 5.93332 5.98623 6.39365 6.60808 6.87347 7.00145 7.17539 7.47277 7.77727 8.05190 8.22337 8.30347 8.53846 8.79121 9.10790 10.25164 10.37825 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.035040 B = 0.006436 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.902887 B = 4349.636521 C = 5133.384323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.272 6.272 3 C 0.326 3.674 4 N -0.548 5.548 5 C 0.119 3.881 6 C -0.215 4.215 7 C -0.016 4.016 8 C -0.033 4.033 9 C 0.195 3.805 10 N -0.358 5.358 11 N -0.486 5.486 12 H 0.422 0.578 13 C 0.359 3.641 14 C -0.458 4.458 15 H 0.085 0.915 16 C 0.084 3.916 17 N -0.738 5.738 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.264 1.264 22 N -0.520 5.520 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.152 0.848 27 H 0.134 0.866 28 H 0.154 0.846 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 3.293 0.002 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.176 6.176 3 C 0.145 3.855 4 N -0.272 5.272 5 C -0.037 4.037 6 C -0.235 4.235 7 C -0.043 4.043 8 C -0.039 4.039 9 C -0.083 4.083 10 N -0.197 5.197 11 N -0.205 5.205 12 H 0.264 0.736 13 C 0.107 3.893 14 C -0.500 4.500 15 H 0.103 0.897 16 C -0.142 4.142 17 N -0.363 5.363 18 Si 0.740 3.260 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.188 1.188 22 N -0.253 5.253 23 H 0.108 0.892 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.169 0.831 27 H 0.152 0.848 28 H 0.172 0.828 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.838 3.368 0.009 8.531 hybrid contribution 1.618 -0.813 -0.010 1.810 sum -6.221 2.556 -0.001 6.725 Atomic orbital electron populations 1.22765 0.79130 1.02241 1.01502 1.86567 1.20876 1.23313 1.86884 1.19889 0.88600 0.84724 0.92330 1.67272 1.40621 0.98679 1.20635 1.22253 0.92908 0.93387 0.95147 1.21859 0.94594 0.99525 1.07551 1.21628 1.01791 0.89565 0.91348 1.17604 0.88545 0.91880 1.05846 1.21548 0.90699 0.89658 1.06397 1.74067 1.15933 1.00465 1.29213 1.45071 1.04420 1.08438 1.62570 0.73598 1.21494 0.88496 0.85411 0.93895 1.18219 0.86717 0.94320 1.50718 0.89737 1.25728 1.00861 0.94476 0.93112 1.69954 1.32422 1.02785 1.31090 0.86204 0.81069 0.79636 0.79071 1.19525 1.20162 1.18760 1.72212 1.06610 1.16109 1.30350 0.89250 0.92999 0.93020 0.83066 0.84840 0.82786 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 101.05 1.05 1.64 15 2 O -0.27 -5.52 8.79 -18.43 -0.16 -5.68 15 3 C 0.33 6.73 7.50 -16.73 -0.13 6.60 15 4 N -0.55 -9.79 9.21 -13.04 -0.12 -9.91 15 5 C 0.12 1.79 11.17 -17.50 -0.20 1.59 15 6 C -0.21 -3.30 10.09 -39.48 -0.40 -3.69 15 7 C -0.02 -0.31 9.81 -38.96 -0.38 -0.69 15 8 C -0.03 -0.75 5.91 -104.59 -0.62 -1.37 15 9 C 0.19 5.12 7.74 -156.67 -1.21 3.91 15 10 N -0.36 -9.19 10.77 32.06 0.35 -8.85 15 11 N -0.49 -11.89 7.07 31.13 0.22 -11.67 15 12 H 0.42 8.60 8.96 -190.21 -1.71 6.90 15 13 C 0.36 9.81 7.70 -155.71 -1.20 8.61 15 14 C -0.46 -11.89 9.47 -38.06 -0.36 -12.25 15 15 H 0.08 1.99 7.85 -52.49 -0.41 1.58 15 16 C 0.08 2.09 5.50 -17.30 -0.10 2.00 15 17 N -0.74 -19.47 11.94 55.56 0.66 -18.81 15 18 Si 0.92 18.26 29.56 -169.99 -5.03 13.23 15 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 22 N -0.52 -14.68 9.34 -10.45 -0.10 -14.77 15 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.05 0.73 8.10 -51.93 -0.42 0.31 15 25 H 0.05 0.72 8.11 -51.93 -0.42 0.30 15 26 H 0.15 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 28 H 0.15 3.15 7.91 -52.49 -0.42 2.74 15 29 H 0.28 6.57 8.29 -40.82 -0.34 6.23 15 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -32.17 266.76 -7.47 -39.64 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.78 Total: 6.45 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -3.54 Total: 6.34 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 1.01 Total: -64.00 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.16 Total: -5.68 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.17 -7.47 -39.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390662456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.079 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds