Wall clock time and date at job start Mon Mar 30 2020 03:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35577 * 117.00132 * 2 1 4 4 N 1.32176 * 119.77584 * 0.22429 * 3 2 1 5 5 C 1.31953 * 121.77859 * 180.26327 * 4 3 2 6 6 C 1.38232 * 121.11228 * 359.77344 * 5 4 3 7 7 C 1.38510 * 119.41957 * 359.97438 * 6 5 4 8 8 C 1.39627 * 118.37142 * 359.97438 * 7 6 5 9 9 C 1.48237 * 120.56585 * 179.97438 * 8 7 6 10 10 N 1.32120 * 125.68157 * 180.27630 * 9 8 7 11 11 N 1.28849 * 109.19133 * 180.15813 * 10 9 8 12 12 H 0.97001 * 125.98554 * 179.87643 * 11 10 9 13 13 C 1.36974 * 108.03275 * 359.60673 * 11 10 9 14 14 C 1.40311 * 126.54427 * 180.27881 * 13 11 10 15 15 H 1.07994 * 120.00433 * 359.97438 * 14 13 11 16 16 C 1.40224 * 119.99516 * 180.02562 * 14 13 11 17 17 N 1.30661 * 120.00411 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99615 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47218 * 89.99842 * 18 16 14 20 20 H 1.48506 * 109.47069 * 209.99737 * 18 16 14 21 21 H 1.48495 * 109.47501 * 329.99806 * 18 16 14 22 22 N 1.33332 * 106.90293 * 0.23938 * 13 11 10 23 23 H 1.08999 * 109.47411 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46887 * 300.00069 * 1 2 3 25 25 H 1.09005 * 109.47051 * 59.99993 * 1 2 3 26 26 H 1.07991 * 119.44053 * 179.75131 * 5 4 3 27 27 H 1.08002 * 120.28690 * 179.97438 * 6 5 4 28 28 H 1.07995 * 120.81028 * 179.97438 * 7 6 5 29 29 H 0.97001 * 120.00399 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3203 2.3137 0.0045 5 6 1.8779 3.5096 -0.0005 6 6 3.2524 3.6569 -0.0060 7 6 4.0574 2.5297 -0.0057 8 6 3.4432 1.2758 0.0007 9 6 4.2580 0.0374 0.0006 10 7 3.7849 -1.1963 0.0012 11 7 4.7695 -2.0274 0.0043 12 1 4.6987 -2.9948 0.0071 13 6 5.9337 -1.3057 -0.0030 14 6 7.2377 -1.8236 -0.0081 15 1 7.3944 -2.8921 -0.0060 16 6 8.3375 -0.9537 -0.0150 17 7 8.1479 0.3391 -0.0171 18 14 10.0736 -1.6431 -0.0211 19 1 10.5275 -1.8291 -1.4228 20 1 10.9842 -0.6972 0.6728 21 1 10.0893 -2.9510 0.6819 22 7 5.5910 -0.0172 -0.0053 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.2499 4.3881 -0.0006 27 1 3.6946 4.6422 -0.0104 28 1 5.1337 2.6186 -0.0104 29 1 8.9087 0.9409 -0.0222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390662456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:23 Heat of formation + Delta-G solvation = 54.038195 kcal Electronic energy + Delta-G solvation = -17055.505817 eV Core-core repulsion = 14172.795782 eV Total energy + Delta-G solvation = -2882.710035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.86065 -41.32008 -38.68701 -35.59024 -34.42545 -32.57087 -32.13532 -30.80812 -28.08506 -27.67012 -25.09759 -23.86737 -22.52508 -21.54328 -19.45043 -19.15920 -18.19039 -17.60037 -16.91064 -16.53757 -16.34624 -15.97304 -15.50949 -15.00715 -14.67035 -14.29585 -14.02007 -13.51919 -13.16676 -12.91242 -12.66178 -12.51510 -12.08642 -12.06606 -11.73285 -11.47246 -11.30322 -10.65426 -10.35086 -10.07293 -9.89765 -8.96370 -8.45915 -6.59698 0.02262 0.38063 1.35260 1.46595 1.61338 1.81597 2.24496 2.27321 2.49790 2.77846 3.06357 3.36741 3.46573 3.79565 3.98234 4.15131 4.40802 4.47645 4.50081 4.59767 4.74381 4.81503 5.18634 5.20543 5.40183 5.56884 5.64784 6.13390 6.34280 6.42136 6.57436 6.82763 6.91377 7.21498 8.30513 8.51698 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.035040 B = 0.006436 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.902887 B = 4349.636521 C = 5133.384323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.302 6.302 3 C 0.318 3.682 4 N -0.547 5.547 5 C 0.137 3.863 6 C -0.198 4.198 7 C -0.024 4.024 8 C -0.086 4.086 9 C 0.183 3.817 10 N -0.371 5.371 11 N -0.483 5.483 12 H 0.436 0.564 13 C 0.331 3.669 14 C -0.482 4.482 15 H 0.102 0.898 16 C 0.036 3.964 17 N -0.778 5.778 18 Si 1.001 2.999 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.253 1.253 22 N -0.554 5.554 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.207 0.793 27 H 0.178 0.822 28 H 0.134 0.866 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 4.499 0.009 8.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.207 6.207 3 C 0.138 3.862 4 N -0.272 5.272 5 C -0.020 4.020 6 C -0.218 4.218 7 C -0.052 4.052 8 C -0.091 4.091 9 C -0.095 4.095 10 N -0.209 5.209 11 N -0.204 5.204 12 H 0.281 0.719 13 C 0.079 3.921 14 C -0.523 4.523 15 H 0.120 0.880 16 C -0.186 4.186 17 N -0.403 5.403 18 Si 0.821 3.179 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.177 1.177 22 N -0.288 5.288 23 H 0.129 0.871 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.223 0.777 27 H 0.195 0.805 28 H 0.152 0.848 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.129 4.543 0.017 9.313 hybrid contribution 1.561 -1.049 -0.014 1.881 sum -6.569 3.494 0.003 7.440 Atomic orbital electron populations 1.23024 0.76673 1.03971 1.02205 1.86508 1.23502 1.23845 1.86859 1.19879 0.88085 0.85661 0.92566 1.67434 1.40169 0.98879 1.20713 1.23220 0.93489 0.93887 0.91360 1.22266 0.94539 0.99799 1.05195 1.21643 1.01385 0.90268 0.91873 1.17833 0.89608 0.91541 1.10156 1.22287 0.90594 0.91138 1.05470 1.74006 1.16180 1.00650 1.30024 1.45012 1.03686 1.09109 1.62579 0.71950 1.21948 0.89636 0.85924 0.94616 1.18760 0.86877 0.95580 1.51107 0.88005 1.26826 1.05367 0.94548 0.91857 1.70072 1.34303 1.04446 1.31470 0.84927 0.74578 0.79079 0.79305 1.18845 1.19518 1.17673 1.72151 1.07926 1.17044 1.31633 0.87141 0.92209 0.92222 0.77660 0.80506 0.84847 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.04 10.38 113.37 1.18 2.22 15 2 O -0.30 -12.37 8.79 -88.85 -0.78 -13.15 15 3 C 0.32 13.15 7.50 85.08 0.64 13.79 15 4 N -0.55 -18.36 9.21 -308.13 -2.84 -21.19 15 5 C 0.14 3.56 11.17 84.67 0.95 4.50 15 6 C -0.20 -5.50 10.09 22.33 0.23 -5.28 15 7 C -0.02 -0.95 9.81 22.67 0.22 -0.73 15 8 C -0.09 -4.00 5.91 -19.85 -0.12 -4.12 15 9 C 0.18 10.09 7.74 137.41 1.06 11.16 15 10 N -0.37 -19.78 10.77 -52.48 -0.57 -20.34 15 11 N -0.48 -24.54 7.07 -55.42 -0.39 -24.93 15 12 H 0.44 18.41 8.96 -219.80 -1.97 16.44 15 13 C 0.33 18.78 7.70 133.75 1.03 19.81 15 14 C -0.48 -25.52 9.47 23.26 0.22 -25.30 15 15 H 0.10 4.82 7.85 -2.91 -0.02 4.79 15 16 C 0.04 1.81 5.50 85.35 0.47 2.28 15 17 N -0.78 -42.07 11.94 21.87 0.26 -41.81 15 18 Si 1.00 37.20 29.56 68.60 2.03 39.22 15 19 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 20 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 21 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 22 N -0.55 -32.76 9.34 -186.97 -1.75 -34.50 15 23 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.06 1.60 8.10 -2.39 -0.02 1.58 15 25 H 0.06 1.59 8.11 -2.38 -0.02 1.57 15 26 H 0.21 3.14 8.06 -2.92 -0.02 3.12 15 27 H 0.18 3.34 8.06 -2.91 -0.02 3.32 15 28 H 0.13 5.72 7.91 -2.91 -0.02 5.70 15 29 H 0.28 13.75 8.29 -92.71 -0.77 12.98 15 Total: -1.00 -73.29 266.76 1.07 -72.22 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.77 Total: 26.16 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 5.87 Total: 18.34 kcal Atomic # 7 Polarization: -137.50 SS G_CDS: -5.28 Total: -142.78 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.78 Total: -13.15 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.22 kcal Total: -73.29 1.07 -72.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390662456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.258 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds