Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00251 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99777 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00384 * 3 2 1 7 7 C 1.38951 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00337 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99976 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99761 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00171 * 180.02562 * 13 12 10 15 15 H 1.09007 * 112.50947 * 25.33077 * 14 13 12 16 16 C 1.52882 * 113.16814 * 155.15966 * 14 13 12 17 17 C 1.51593 * 84.67609 * 115.22877 * 16 14 13 18 18 C 1.38949 * 145.53544 * 179.97438 * 17 16 14 19 19 C 1.37980 * 120.32152 * 180.02562 * 18 17 16 20 20 C 1.38243 * 120.17897 * 359.97438 * 19 18 17 21 21 C 1.38174 * 119.74612 * 359.97438 * 20 19 18 22 22 C 1.38242 * 120.13055 * 0.02562 * 21 20 19 23 23 H 0.97000 * 119.99719 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99980 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47165 * 299.99737 * 12 10 9 26 26 H 1.09004 * 109.47237 * 59.99891 * 12 10 9 27 27 H 1.00896 * 111.00388 * 56.04454 * 13 12 10 28 28 H 1.09010 * 113.99138 * 229.17025 * 16 14 13 29 29 H 1.09003 * 113.99075 * 1.27643 * 16 14 13 30 30 H 1.07994 * 119.83694 * 0.02562 * 18 17 16 31 31 H 1.08001 * 119.90980 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.12641 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.93725 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.4981 -7.2708 -0.0039 15 1 0.4992 -7.2034 -0.4350 16 6 2.3328 -8.4072 -0.5949 17 6 2.2759 -8.9875 0.8044 18 6 2.6610 -10.0412 1.6242 19 6 2.2937 -10.0595 2.9540 20 6 1.5393 -9.0278 3.4809 21 6 1.1544 -7.9768 2.6706 22 6 1.5218 -7.9574 1.3380 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3534 -2.3907 -0.0016 25 1 0.6167 -4.9208 0.8876 26 1 0.6173 -4.9204 -0.8924 27 1 2.8332 -5.9129 0.7786 28 1 1.8069 -9.0007 -1.3429 29 1 3.3318 -8.1057 -0.9099 30 1 3.2507 -10.8499 1.2184 31 1 2.5963 -10.8821 3.5851 32 1 1.2526 -9.0427 4.5220 33 1 0.5654 -7.1690 3.0790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390817903.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = 30.170717 kcal Electronic energy + Delta-G solvation = -16646.292152 eV Core-core repulsion = 13866.087489 eV Total energy + Delta-G solvation = -2780.204663 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66068 -38.34489 -36.27071 -34.36664 -33.00368 -31.05828 -30.73986 -27.53834 -26.22621 -24.13305 -23.26440 -21.55491 -20.13909 -19.64210 -17.91104 -17.08834 -16.25762 -15.69178 -15.20687 -15.10586 -14.55362 -14.38534 -13.77731 -13.58638 -13.19332 -13.10069 -12.74034 -12.41820 -12.09841 -11.91240 -11.61339 -11.21039 -10.99842 -10.93053 -10.42359 -10.19741 -9.86089 -9.54264 -9.03318 -8.80880 -8.50401 -8.12543 -8.02487 -6.74915 -3.87988 1.21256 1.28367 3.31861 3.35721 3.56065 3.63332 3.84741 4.04171 4.10345 4.32007 4.39330 4.71374 4.91321 4.98580 5.06177 5.18794 5.26224 5.49930 5.50413 5.63217 5.65732 5.80956 5.84435 5.87808 6.00191 6.06539 6.27794 6.38101 6.65803 6.88647 7.09995 7.53831 7.81314 8.08690 8.60542 8.80243 9.47992 9.88006 10.68592 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046319 B = 0.004033 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.358980 B = 6941.896550 C = 7115.675975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.009 4.009 3 Si 1.092 2.908 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.383 4.383 8 H 0.099 0.901 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.049 3.951 13 N -0.649 5.649 14 C 0.136 3.864 15 H 0.098 0.902 16 C -0.066 4.066 17 C -0.119 4.119 18 C -0.104 4.104 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.084 4.084 22 C -0.167 4.167 23 H 0.261 0.739 24 H 0.376 0.624 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.356 0.644 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -17.766 3.239 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.212 4.212 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.512 4.512 8 H 0.117 0.883 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.280 5.280 14 C 0.025 3.975 15 H 0.116 0.884 16 C -0.103 4.103 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.141 4.141 21 C -0.102 4.102 22 C -0.169 4.169 23 H 0.072 0.928 24 H 0.209 0.791 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.177 0.823 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.189 -16.031 2.555 16.235 hybrid contribution -0.792 -1.867 1.101 2.308 sum -0.602 -17.899 3.656 18.278 Atomic orbital electron populations 1.70902 1.06518 1.29375 1.47238 1.26514 0.96541 1.02630 0.95472 0.83131 0.74431 0.73613 0.77087 1.20411 1.21028 1.20966 1.20544 0.94690 0.83867 1.52083 0.88322 1.41930 1.08185 1.05533 1.65679 1.19713 0.88412 0.84452 0.84552 1.90532 1.13674 1.86910 1.54889 1.21756 0.94465 0.90914 1.01260 1.60121 1.17900 0.98956 1.51003 1.21656 0.97798 0.89378 0.88677 0.88399 1.21952 1.02201 0.93972 0.92188 1.22483 0.97576 0.94772 0.97154 1.20534 1.00539 0.97907 0.93233 1.20957 0.98829 0.98831 0.94952 1.21016 0.99200 0.94345 0.99523 1.20280 0.99674 0.98369 0.91922 1.22804 0.99336 0.99280 0.95436 0.92773 0.79130 0.93707 0.89402 0.82301 0.88783 0.87761 0.86580 0.85929 0.85732 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 13.68 55.50 0.76 -24.63 16 2 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 3 Si 1.09 24.43 29.92 -169.99 -5.09 19.35 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.38 -10.88 9.68 -14.93 -0.14 -11.03 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.58 -14.63 5.28 -10.96 -0.06 -14.69 16 10 C 0.44 10.63 7.82 -10.99 -0.09 10.55 16 11 O -0.58 -16.06 15.78 5.55 0.09 -15.97 16 12 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 13 N -0.65 -10.86 6.19 -113.19 -0.70 -11.56 16 14 C 0.14 1.80 4.15 -72.54 -0.30 1.50 16 15 H 0.10 1.17 7.86 -51.93 -0.41 0.76 16 16 C -0.07 -0.76 8.20 -27.50 -0.23 -0.98 16 17 C -0.12 -1.48 7.32 -107.51 -0.79 -2.27 16 18 C -0.10 -1.16 10.05 -39.41 -0.40 -1.55 16 19 C -0.12 -1.22 10.03 -39.67 -0.40 -1.62 16 20 C -0.12 -1.34 10.06 -39.60 -0.40 -1.74 16 21 C -0.08 -1.05 10.04 -39.60 -0.40 -1.45 16 22 C -0.17 -2.22 7.00 -104.55 -0.73 -2.95 16 23 H 0.26 7.06 6.77 -40.82 -0.28 6.78 16 24 H 0.38 8.79 6.73 -40.82 -0.27 8.51 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.41 8.12 -51.93 -0.42 0.98 16 27 H 0.36 6.44 8.08 -39.29 -0.32 6.12 16 28 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -32.88 289.41 -8.46 -41.34 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -3.83 Total: 12.85 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.99 Total: -11.05 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.00 Total: -50.88 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.09 Total: -15.97 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.09 Total: 19.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.88 -8.46 -41.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390817903.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.509 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds