Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00251 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99777 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00384 * 3 2 1 7 7 C 1.38951 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00337 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99976 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99761 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00171 * 180.02562 * 13 12 10 15 15 H 1.09007 * 112.50947 * 25.33077 * 14 13 12 16 16 C 1.52882 * 113.16814 * 155.15966 * 14 13 12 17 17 C 1.51593 * 84.67609 * 115.22877 * 16 14 13 18 18 C 1.38949 * 145.53544 * 179.97438 * 17 16 14 19 19 C 1.37980 * 120.32152 * 180.02562 * 18 17 16 20 20 C 1.38243 * 120.17897 * 359.97438 * 19 18 17 21 21 C 1.38174 * 119.74612 * 359.97438 * 20 19 18 22 22 C 1.38242 * 120.13055 * 0.02562 * 21 20 19 23 23 H 0.97000 * 119.99719 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99980 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47165 * 299.99737 * 12 10 9 26 26 H 1.09004 * 109.47237 * 59.99891 * 12 10 9 27 27 H 1.00896 * 111.00388 * 56.04454 * 13 12 10 28 28 H 1.09010 * 113.99138 * 229.17025 * 16 14 13 29 29 H 1.09003 * 113.99075 * 1.27643 * 16 14 13 30 30 H 1.07994 * 119.83694 * 0.02562 * 18 17 16 31 31 H 1.08001 * 119.90980 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.12641 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.93725 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.4981 -7.2708 -0.0039 15 1 0.4992 -7.2034 -0.4350 16 6 2.3328 -8.4072 -0.5949 17 6 2.2759 -8.9875 0.8044 18 6 2.6610 -10.0412 1.6242 19 6 2.2937 -10.0595 2.9540 20 6 1.5393 -9.0278 3.4809 21 6 1.1544 -7.9768 2.6706 22 6 1.5218 -7.9574 1.3380 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3534 -2.3907 -0.0016 25 1 0.6167 -4.9208 0.8876 26 1 0.6173 -4.9204 -0.8924 27 1 2.8332 -5.9129 0.7786 28 1 1.8069 -9.0007 -1.3429 29 1 3.3318 -8.1057 -0.9099 30 1 3.2507 -10.8499 1.2184 31 1 2.5963 -10.8821 3.5851 32 1 1.2526 -9.0427 4.5220 33 1 0.5654 -7.1690 3.0790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390817903.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = 7.591774 kcal Electronic energy + Delta-G solvation = -16647.271248 eV Core-core repulsion = 13866.087489 eV Total energy + Delta-G solvation = -2781.183759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60105 -40.24831 -37.35342 -36.36458 -34.30477 -33.10264 -31.62539 -28.72971 -27.58474 -25.88247 -24.39862 -22.46763 -21.60563 -20.99171 -19.99616 -18.35556 -17.65059 -17.09465 -16.48293 -16.33623 -16.11628 -15.59751 -15.49861 -15.04794 -14.58123 -14.05277 -13.93640 -13.50870 -13.35637 -13.29443 -12.97492 -12.85888 -12.72006 -11.91868 -11.90682 -11.87054 -11.54066 -11.33203 -10.45904 -10.13110 -9.96590 -9.70733 -9.33246 -8.94156 -6.08282 0.33746 0.40852 1.51786 1.54565 1.82890 1.98142 2.39094 2.68639 2.87395 3.09659 3.15327 3.36830 3.48852 3.79960 4.08591 4.15415 4.19116 4.20902 4.34873 4.45714 4.67211 4.68021 4.82482 4.92829 4.96936 5.14959 5.44302 5.53932 5.57579 5.72828 5.90074 5.96228 6.05254 6.18986 6.55935 6.72245 7.41902 7.89706 8.53592 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046319 B = 0.004033 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.358980 B = 6941.896550 C = 7115.675975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.041 4.041 3 Si 1.134 2.866 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.413 4.413 8 H 0.073 0.927 9 N -0.585 5.585 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.064 3.936 13 N -0.661 5.661 14 C 0.133 3.867 15 H 0.112 0.888 16 C -0.058 4.058 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.191 4.191 23 H 0.259 0.741 24 H 0.385 0.615 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.345 0.655 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 -19.052 3.524 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.239 4.239 3 Si 0.953 3.047 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.091 0.909 9 N -0.224 5.224 10 C 0.229 3.771 11 O -0.505 6.505 12 C -0.068 4.068 13 N -0.291 5.291 14 C 0.023 3.977 15 H 0.130 0.870 16 C -0.095 4.095 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.122 4.122 22 C -0.193 4.193 23 H 0.070 0.930 24 H 0.220 0.780 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.155 0.845 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.215 -17.357 2.835 17.588 hybrid contribution -0.671 -1.591 1.054 2.023 sum -0.886 -18.948 3.889 19.364 Atomic orbital electron populations 1.70971 1.06982 1.29519 1.47992 1.27839 0.96678 1.05307 0.94064 0.82635 0.73827 0.70279 0.77940 1.19625 1.19833 1.19790 1.20541 0.93941 0.85689 1.54006 0.90913 1.41976 1.08638 1.05441 1.66307 1.20833 0.88272 0.85978 0.82059 1.90500 1.15924 1.87866 1.56177 1.21636 0.94062 0.87826 1.03305 1.60153 1.18120 1.00096 1.50688 1.21793 0.98494 0.87928 0.89520 0.87017 1.21940 1.01734 0.93295 0.92543 1.22670 0.97786 0.95188 0.97583 1.20880 1.00484 0.98121 0.93573 1.21359 0.97790 0.99290 0.95046 1.21353 0.98813 0.93888 1.00500 1.20511 1.00342 0.99230 0.92096 1.22859 1.00674 0.99967 0.95768 0.92960 0.78048 0.91657 0.86975 0.83589 0.86316 0.88596 0.84525 0.83047 0.83526 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.33 13.68 21.66 0.30 -51.04 16 2 C -0.04 -2.22 5.50 84.93 0.47 -1.75 16 3 Si 1.13 48.81 29.92 68.60 2.05 50.86 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.41 -23.90 9.68 84.04 0.81 -23.09 16 8 H 0.07 4.53 7.16 -2.91 -0.02 4.51 16 9 N -0.58 -30.11 5.28 -306.98 -1.62 -31.73 16 10 C 0.44 21.36 7.82 87.66 0.69 22.04 16 11 O -0.62 -35.30 15.78 -3.07 -0.05 -35.35 16 12 C 0.06 2.22 6.01 85.55 0.51 2.73 16 13 N -0.66 -21.76 6.19 -512.04 -3.17 -24.93 16 14 C 0.13 3.35 4.15 41.79 0.17 3.52 16 15 H 0.11 2.45 7.86 -2.38 -0.02 2.43 16 16 C -0.06 -1.25 8.20 30.09 0.25 -1.00 16 17 C -0.13 -3.07 7.32 -21.73 -0.16 -3.23 16 18 C -0.11 -2.26 10.05 22.38 0.22 -2.04 16 19 C -0.12 -2.12 10.03 22.21 0.22 -1.90 16 20 C -0.13 -2.54 10.06 22.26 0.22 -2.32 16 21 C -0.10 -2.49 10.04 22.26 0.22 -2.27 16 22 C -0.19 -4.89 7.00 -19.82 -0.14 -5.03 16 23 H 0.26 14.05 6.77 -92.71 -0.63 13.42 16 24 H 0.39 18.10 6.73 -92.71 -0.62 17.48 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.11 3.37 8.12 -2.38 -0.02 3.35 16 27 H 0.35 12.61 8.08 -89.70 -0.73 11.89 16 28 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.10 2.22 8.13 -2.39 -0.02 2.20 16 30 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -71.19 289.41 0.94 -70.25 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.07 Total: 36.27 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 3.50 Total: -14.33 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -4.50 Total: -107.70 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.05 Total: -35.35 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.86 kcal Total: -71.19 0.94 -70.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390817903.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.844 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds