Wall clock time and date at job start Mon Mar 30 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39811 * 120.07592 * 34.91150 * 3 2 1 5 5 C 1.37652 * 119.92043 * 180.02562 * 4 3 2 6 6 C 1.39177 * 120.07928 * 0.02562 * 5 4 3 7 7 N 1.39184 * 119.92217 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99609 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47035 * 180.02562 * 8 7 6 10 10 O 1.42903 * 109.47256 * 64.99491 * 9 8 7 11 11 C 1.42894 * 114.00108 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47254 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99897 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00187 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99786 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47473 * 59.99869 * 16 14 12 18 18 H 1.48502 * 109.47250 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47209 * 299.99771 * 16 14 12 20 20 C 1.39172 * 120.14840 * 0.27135 * 6 5 4 21 21 C 1.37658 * 120.07999 * 359.45019 * 20 6 5 22 22 H 1.07994 * 120.03394 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.95518 * 179.97438 * 5 4 3 24 24 H 0.96999 * 120.00311 * 359.97438 * 7 6 5 25 25 H 1.09004 * 109.47073 * 299.99765 * 8 7 6 26 26 H 1.09000 * 109.47212 * 59.99847 * 8 7 6 27 27 H 1.08997 * 109.47011 * 184.99706 * 9 8 7 28 28 H 1.09005 * 109.46847 * 304.99833 * 9 8 7 29 29 H 1.08998 * 109.47256 * 300.00496 * 11 10 9 30 30 H 1.09009 * 109.46884 * 60.00274 * 11 10 9 31 31 H 0.96995 * 119.99970 * 179.97438 * 15 14 12 32 32 H 1.08003 * 119.96264 * 179.70759 * 20 6 5 33 33 H 1.07996 * 120.03886 * 180.27590 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.9912 -0.6924 5 6 4.6456 -0.9878 -0.6898 6 6 5.3394 0.0010 0.0014 7 7 6.7313 0.0010 0.0022 8 6 7.4633 1.0408 0.7298 9 6 8.9676 0.8121 0.5700 10 8 9.3323 0.9820 -0.8012 11 6 10.7243 0.7898 -1.0605 12 6 10.9945 0.9929 -2.5291 13 1 10.1841 1.2432 -3.1976 14 6 12.2761 0.8580 -3.0194 15 7 13.2627 0.5517 -2.2055 16 14 12.6108 1.1090 -4.8399 17 1 12.2209 2.4879 -5.2295 18 1 14.0572 0.9082 -5.1096 19 1 11.8202 0.1297 -5.6282 20 6 4.6446 0.9862 0.6968 21 6 3.2681 0.9923 0.6937 22 1 2.7312 -1.7590 -1.2286 23 1 5.1877 -1.7539 -1.2242 24 1 7.2166 -0.6878 -0.4782 25 1 7.2002 2.0193 0.3277 26 1 7.1992 0.9993 1.7865 27 1 9.5115 1.5313 1.1824 28 1 9.2173 -0.1997 0.8897 29 1 11.3044 1.5088 -0.4819 30 1 11.0108 -0.2223 -0.7745 31 1 14.1642 0.4565 -2.5505 32 1 5.1861 1.7494 1.2361 33 1 2.7296 1.7597 1.2299 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395435173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:59 Heat of formation + Delta-G solvation = -0.456581 kcal Electronic energy + Delta-G solvation = -16037.102699 eV Core-core repulsion = 13255.569937 eV Total energy + Delta-G solvation = -2781.532762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71226 -37.45563 -36.54628 -35.13220 -32.83406 -31.30951 -30.72744 -28.25691 -26.85022 -23.51251 -23.02430 -22.44124 -21.37260 -18.90080 -17.49556 -16.58557 -16.09238 -15.89737 -14.91587 -14.65032 -14.55934 -14.17583 -14.08672 -13.66924 -13.56669 -13.51610 -13.13529 -12.66083 -12.29805 -12.14084 -11.94920 -11.52386 -11.07353 -10.96330 -10.87294 -10.79099 -10.15679 -10.09891 -9.25267 -9.17495 -8.99876 -8.33568 -7.49758 -6.21044 -4.23712 0.94478 1.29927 2.68305 2.98069 3.25933 3.29337 3.32599 3.36875 3.89196 3.99453 4.23801 4.61704 4.70695 4.77708 5.13253 5.15700 5.18196 5.34730 5.41028 5.50817 5.78691 5.80989 5.85314 5.98254 6.07148 6.15552 6.30917 6.58264 6.92497 7.20120 7.27224 7.52031 7.66152 7.67848 8.01504 8.39046 8.88155 9.41775 10.90226 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038284 B = 0.003462 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.196334 B = 8084.873152 C = 8551.187626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.269 3.731 3 C -0.116 4.116 4 C -0.016 4.016 5 C -0.204 4.204 6 C 0.258 3.742 7 N -0.720 5.720 8 C 0.123 3.877 9 C 0.048 3.952 10 O -0.394 6.394 11 C 0.196 3.804 12 C -0.519 4.519 13 H 0.066 0.934 14 C 0.058 3.942 15 N -0.898 5.898 16 Si 0.909 3.091 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.209 4.209 21 C -0.015 4.015 22 H 0.128 0.872 23 H 0.131 0.869 24 H 0.410 0.590 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.266 0.734 32 H 0.131 0.869 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 -1.428 7.085 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.044 4.044 3 C -0.122 4.122 4 C -0.038 4.038 5 C -0.227 4.227 6 C 0.148 3.852 7 N -0.345 5.345 8 C -0.002 4.002 9 C -0.030 4.030 10 O -0.314 6.314 11 C 0.122 3.878 12 C -0.557 4.557 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.232 4.232 21 C -0.037 4.037 22 H 0.146 0.854 23 H 0.149 0.851 24 H 0.247 0.753 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.856 -1.248 7.056 16.494 hybrid contribution 1.287 -0.193 -0.872 1.567 sum -13.569 -1.441 6.184 14.981 Atomic orbital electron populations 1.81220 1.12326 1.08937 1.10153 1.25794 0.92690 0.93092 0.92858 1.15732 0.83973 1.02325 1.10176 1.20807 0.93355 0.95386 0.94217 1.20534 0.93784 1.01750 1.06606 1.18144 0.84069 0.92349 0.90671 1.44893 1.02329 1.31841 1.55437 1.21556 0.91043 0.91834 0.95721 1.22480 0.92981 1.00032 0.87543 1.87894 1.29768 1.91977 1.21741 1.20226 0.75303 0.95226 0.97059 1.20990 0.93959 1.48269 0.92477 0.91568 1.24950 0.95634 0.94980 0.98848 1.69941 1.00572 1.47904 1.35252 0.86380 0.77100 0.78981 0.83941 1.19952 1.21107 1.19961 1.20553 0.93722 1.01843 1.07059 1.20827 0.93428 0.95216 0.94215 0.85424 0.85112 0.75330 0.90996 0.91016 0.92619 0.93726 0.97582 0.97631 0.92479 0.85146 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.22 18.54 41.83 0.78 -5.44 16 2 C 0.27 3.13 15.33 -22.47 -0.34 2.79 16 3 C -0.12 -1.16 5.74 -106.79 -0.61 -1.77 16 4 C -0.02 -0.15 9.75 -39.21 -0.38 -0.53 16 5 C -0.20 -2.01 9.87 -39.45 -0.39 -2.40 16 6 C 0.26 2.78 6.65 -83.83 -0.56 2.22 16 7 N -0.72 -8.51 5.66 -58.62 -0.33 -8.84 16 8 C 0.12 1.44 5.28 -4.04 -0.02 1.41 16 9 C 0.05 0.73 6.07 37.16 0.23 0.95 16 10 O -0.39 -8.41 10.27 -35.23 -0.36 -8.77 16 11 C 0.20 4.99 5.69 36.00 0.20 5.20 16 12 C -0.52 -14.56 9.43 -34.44 -0.32 -14.88 16 13 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -25.90 13.29 55.43 0.74 -25.17 16 16 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.21 -2.02 9.28 -39.45 -0.37 -2.39 16 21 C -0.02 -0.14 9.75 -39.20 -0.38 -0.52 16 22 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 23 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 24 H 0.41 5.06 8.48 -40.82 -0.35 4.72 16 25 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16 26 H 0.07 0.65 7.92 -51.93 -0.41 0.24 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.13 1.10 6.70 -52.48 -0.35 0.75 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -30.79 300.82 -6.74 -37.53 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.03 Total: -1.53 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.05 Total: -8.40 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 1.18 Total: -39.45 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.36 Total: -8.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.79 -6.74 -37.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395435173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.073 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds