Wall clock time and date at job start Mon Mar 30 2020 04:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39811 * 120.07592 * 34.91150 * 3 2 1 5 5 C 1.37652 * 119.92043 * 180.02562 * 4 3 2 6 6 C 1.39177 * 120.07928 * 0.02562 * 5 4 3 7 7 N 1.39184 * 119.92217 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99609 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47035 * 180.02562 * 8 7 6 10 10 O 1.42903 * 109.47256 * 64.99491 * 9 8 7 11 11 C 1.42894 * 114.00108 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47254 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99897 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00187 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99786 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47473 * 59.99869 * 16 14 12 18 18 H 1.48502 * 109.47250 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47209 * 299.99771 * 16 14 12 20 20 C 1.39172 * 120.14840 * 0.27135 * 6 5 4 21 21 C 1.37658 * 120.07999 * 359.45019 * 20 6 5 22 22 H 1.07994 * 120.03394 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.95518 * 179.97438 * 5 4 3 24 24 H 0.96999 * 120.00311 * 359.97438 * 7 6 5 25 25 H 1.09004 * 109.47073 * 299.99765 * 8 7 6 26 26 H 1.09000 * 109.47212 * 59.99847 * 8 7 6 27 27 H 1.08997 * 109.47011 * 184.99706 * 9 8 7 28 28 H 1.09005 * 109.46847 * 304.99833 * 9 8 7 29 29 H 1.08998 * 109.47256 * 300.00496 * 11 10 9 30 30 H 1.09009 * 109.46884 * 60.00274 * 11 10 9 31 31 H 0.96995 * 119.99970 * 179.97438 * 15 14 12 32 32 H 1.08003 * 119.96264 * 179.70759 * 20 6 5 33 33 H 1.07996 * 120.03886 * 180.27590 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.9912 -0.6924 5 6 4.6456 -0.9878 -0.6898 6 6 5.3394 0.0010 0.0014 7 7 6.7313 0.0010 0.0022 8 6 7.4633 1.0408 0.7298 9 6 8.9676 0.8121 0.5700 10 8 9.3323 0.9820 -0.8012 11 6 10.7243 0.7898 -1.0605 12 6 10.9945 0.9929 -2.5291 13 1 10.1841 1.2432 -3.1976 14 6 12.2761 0.8580 -3.0194 15 7 13.2627 0.5517 -2.2055 16 14 12.6108 1.1090 -4.8399 17 1 12.2209 2.4879 -5.2295 18 1 14.0572 0.9082 -5.1096 19 1 11.8202 0.1297 -5.6282 20 6 4.6446 0.9862 0.6968 21 6 3.2681 0.9923 0.6937 22 1 2.7312 -1.7590 -1.2286 23 1 5.1877 -1.7539 -1.2242 24 1 7.2166 -0.6878 -0.4782 25 1 7.2002 2.0193 0.3277 26 1 7.1992 0.9993 1.7865 27 1 9.5115 1.5313 1.1824 28 1 9.2173 -0.1997 0.8897 29 1 11.3044 1.5088 -0.4819 30 1 11.0108 -0.2223 -0.7745 31 1 14.1642 0.4565 -2.5505 32 1 5.1861 1.7494 1.2361 33 1 2.7296 1.7597 1.2299 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395435173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:58 Heat of formation + Delta-G solvation = -19.550009 kcal Electronic energy + Delta-G solvation = -16037.930652 eV Core-core repulsion = 13255.569937 eV Total energy + Delta-G solvation = -2782.360715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51144 -38.82942 -37.64203 -36.18874 -34.86240 -32.14985 -31.69612 -29.64669 -28.43254 -24.68108 -24.25035 -23.84092 -22.32767 -19.70283 -18.70459 -18.25797 -17.51095 -17.11298 -16.47325 -16.09870 -15.47266 -15.24665 -15.12411 -14.78518 -14.59639 -14.52108 -14.27622 -13.65750 -13.63189 -13.37361 -13.15907 -12.86144 -12.80708 -12.58622 -12.36979 -11.91874 -11.78631 -11.31017 -10.95694 -10.86379 -10.24238 -9.90141 -8.34232 -8.31911 -6.43970 0.13656 0.57464 1.41562 1.44830 1.53362 1.76903 2.11361 2.34337 2.48350 3.02379 3.09517 3.13688 3.16729 3.97188 4.08470 4.09006 4.27913 4.45032 4.56473 4.67205 4.73078 4.74892 4.85088 4.96699 5.13213 5.19552 5.28664 5.39957 5.55029 5.55935 5.82591 5.96409 6.36297 6.53150 6.62324 6.75087 6.81839 7.28102 8.79479 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038284 B = 0.003462 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.196334 B = 8084.873152 C = 8551.187626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.291 3.709 3 C -0.124 4.124 4 C -0.013 4.013 5 C -0.210 4.210 6 C 0.246 3.754 7 N -0.730 5.730 8 C 0.132 3.868 9 C 0.039 3.961 10 O -0.406 6.406 11 C 0.210 3.790 12 C -0.548 4.548 13 H 0.061 0.939 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.979 3.021 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.266 1.266 20 C -0.211 4.211 21 C -0.010 4.010 22 H 0.144 0.856 23 H 0.139 0.861 24 H 0.405 0.595 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.050 0.950 29 H -0.012 1.012 30 H -0.011 1.011 31 H 0.270 0.730 32 H 0.145 0.855 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 -1.148 6.819 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.022 4.022 3 C -0.130 4.130 4 C -0.034 4.034 5 C -0.233 4.233 6 C 0.137 3.863 7 N -0.355 5.355 8 C 0.009 3.991 9 C -0.038 4.038 10 O -0.326 6.326 11 C 0.135 3.865 12 C -0.586 4.586 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.802 3.198 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.190 1.190 20 C -0.234 4.234 21 C -0.032 4.032 22 H 0.162 0.838 23 H 0.156 0.844 24 H 0.241 0.759 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.384 -0.966 6.811 16.852 hybrid contribution 1.410 -0.293 -0.701 1.602 sum -13.974 -1.259 6.110 15.303 Atomic orbital electron populations 1.81242 1.13553 1.10416 1.11743 1.25967 0.92774 0.91843 0.91619 1.15846 0.83096 1.03109 1.10953 1.20981 0.93204 0.95458 0.93778 1.20682 0.94042 1.01895 1.06639 1.18352 0.83633 0.93075 0.91282 1.44904 1.02815 1.31822 1.55936 1.21521 0.88215 0.91700 0.97694 1.22824 0.95736 1.00718 0.84567 1.87839 1.27042 1.92036 1.25684 1.19798 0.77365 0.93508 0.95794 1.21364 0.94397 1.49022 0.93817 0.92052 1.25900 0.95218 0.94176 1.03799 1.70045 1.01075 1.48317 1.37438 0.85298 0.77319 0.79268 0.77944 1.19153 1.20213 1.19043 1.20738 0.93940 1.01824 1.06885 1.21037 0.93331 0.95177 0.93617 0.83802 0.84352 0.75938 0.91191 0.87584 0.91749 0.93151 0.99470 0.99337 0.92073 0.83732 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.27 18.54 19.00 0.35 -12.91 16 2 C 0.29 6.39 15.33 88.33 1.35 7.74 16 3 C -0.12 -2.24 5.74 -21.27 -0.12 -2.36 16 4 C -0.01 -0.22 9.75 22.51 0.22 0.00 16 5 C -0.21 -3.79 9.87 22.36 0.22 -3.57 16 6 C 0.25 4.85 6.65 38.42 0.26 5.11 16 7 N -0.73 -16.18 5.66 -339.37 -1.92 -18.10 16 8 C 0.13 2.85 5.28 86.38 0.46 3.31 16 9 C 0.04 1.15 6.07 71.98 0.44 1.59 16 10 O -0.41 -17.42 10.27 -148.98 -1.53 -18.95 16 11 C 0.21 10.96 5.69 71.23 0.41 11.36 16 12 C -0.55 -31.09 9.43 25.60 0.24 -30.85 16 13 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 14 C 0.01 0.44 5.46 84.65 0.46 0.90 16 15 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 16 Si 0.98 42.86 29.54 68.60 2.03 44.88 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.21 -3.57 9.28 22.36 0.21 -3.36 16 21 C -0.01 -0.16 9.75 22.51 0.22 0.05 16 22 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 23 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 24 H 0.41 9.72 8.48 -92.71 -0.79 8.93 16 25 H 0.07 1.55 7.94 -2.38 -0.02 1.53 16 26 H 0.11 1.59 7.92 -2.39 -0.02 1.57 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 31 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.14 1.99 6.70 -2.91 -0.02 1.97 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -65.84 300.82 3.91 -61.94 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.34 Total: 6.90 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.36 Total: -10.08 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.28 Total: -84.69 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.53 Total: -18.95 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -65.84 3.91 -61.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395435173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.389 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds