Wall clock time and date at job start Mon Mar 30 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47122 * 89.99659 * 13 12 11 15 15 C 1.47047 * 125.41484 * 269.72029 * 14 13 12 16 16 C 1.54106 * 103.86695 * 179.87095 * 15 14 13 17 17 N 1.47057 * 103.86020 * 0.37199 * 16 15 14 18 18 C 1.33955 * 125.40540 * 90.02553 * 14 13 12 19 19 O 1.21579 * 123.04356 * 0.02562 * 18 14 13 20 20 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 21 21 C 1.37614 * 120.25107 * 359.44663 * 20 12 11 22 22 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 25 25 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 26 26 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 27 27 H 1.08999 * 110.54769 * 298.59581 * 15 14 13 28 28 H 1.09007 * 110.54787 * 61.40307 * 15 14 13 29 29 H 1.08996 * 110.75839 * 241.68147 * 16 15 14 30 30 H 1.08998 * 110.46797 * 118.92221 * 16 15 14 31 31 H 0.96993 * 125.41553 * 179.75572 * 17 16 15 32 32 H 1.08003 * 119.87291 * 179.69838 * 20 12 11 33 33 H 1.08002 * 120.12976 * 180.27263 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 7 -0.0449 -6.5438 2.7359 15 6 1.0839 -7.4831 2.8116 16 6 1.2947 -7.6861 4.3246 17 7 0.2564 -6.8466 4.9407 18 6 -0.4497 -6.2414 3.9766 19 8 -1.3745 -5.4864 4.2066 20 6 -0.4120 -3.5333 1.5634 21 6 0.2229 -2.3640 1.2121 22 1 -0.4850 0.8401 -0.0004 23 1 2.6869 -3.6941 -0.7378 24 1 1.5339 -5.7607 -0.0797 25 1 -1.6958 -5.8233 1.6614 26 1 -0.5250 -6.7642 0.7063 27 1 0.8294 -8.4267 2.3288 28 1 1.9746 -7.0482 2.3580 29 1 2.2869 -7.3494 4.6249 30 1 1.1495 -8.7326 4.5927 31 1 0.1065 -6.7469 5.8938 32 1 -1.2815 -3.5021 2.2032 33 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399209973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:07 Heat of formation + Delta-G solvation = -21.018738 kcal Electronic energy + Delta-G solvation = -17284.693051 eV Core-core repulsion = 14502.268647 eV Total energy + Delta-G solvation = -2782.424404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81337 -39.41651 -37.30751 -36.09176 -34.73665 -32.00863 -31.15666 -29.79661 -28.45030 -25.68933 -23.76362 -22.82652 -22.27347 -20.93655 -19.23193 -18.55946 -17.51651 -17.25419 -16.84141 -16.00137 -15.61519 -15.49873 -15.17241 -14.93143 -14.62144 -14.36741 -13.82455 -13.52657 -13.32529 -13.05766 -12.90566 -12.81173 -12.63294 -12.33130 -12.15146 -11.56391 -11.29565 -11.27291 -11.01689 -10.25854 -9.41801 -9.34037 -9.22049 -8.65802 -6.36217 0.85609 1.14802 1.35421 1.43466 1.51587 1.90080 2.18539 2.21979 2.72905 3.22052 3.68387 3.76775 4.04885 4.20321 4.42003 4.49212 4.58149 4.67426 4.71601 4.80368 5.03972 5.06719 5.09466 5.17015 5.37562 5.45244 5.69829 5.85143 5.94498 6.09224 6.23887 6.27711 6.36636 6.69276 6.69940 6.91621 7.02749 7.67273 8.31034 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036648 B = 0.005388 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.845913 B = 5195.647482 C = 5352.103241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.080 0.920 9 C 0.082 3.918 10 C -0.242 4.242 11 C -0.065 4.065 12 C -0.229 4.229 13 C 0.215 3.785 14 N -0.626 5.626 15 C 0.083 3.917 16 C 0.096 3.904 17 N -0.740 5.740 18 C 0.680 3.320 19 O -0.647 6.647 20 C -0.088 4.088 21 C -0.198 4.198 22 H 0.287 0.713 23 H 0.104 0.896 24 H 0.133 0.867 25 H 0.058 0.942 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.432 0.568 32 H 0.078 0.922 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -14.367 4.628 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.098 0.902 9 C 0.079 3.921 10 C -0.262 4.262 11 C -0.084 4.084 12 C -0.231 4.231 13 C 0.094 3.906 14 N -0.363 5.363 15 C -0.039 4.039 16 C -0.028 4.028 17 N -0.402 5.402 18 C 0.380 3.620 19 O -0.530 6.530 20 C -0.107 4.107 21 C -0.217 4.217 22 H 0.098 0.902 23 H 0.122 0.878 24 H 0.151 0.849 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.274 0.726 32 H 0.096 0.904 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.182 -13.843 4.553 15.161 hybrid contribution -0.075 1.355 0.447 1.429 sum 4.107 -12.488 5.000 14.065 Atomic orbital electron populations 1.69908 1.09288 1.30529 1.35624 1.26853 0.95446 1.04862 0.91163 0.85178 0.79146 0.75760 0.79539 1.18269 1.19416 1.18026 1.19885 0.98441 0.92502 1.42079 0.90212 1.18002 0.91462 0.93700 0.88899 1.21215 1.04616 0.92991 1.07365 1.20725 0.94086 0.97350 0.96203 1.19766 1.01860 0.94039 1.07447 1.19814 0.94840 0.92399 0.83573 1.47496 1.36060 1.48370 1.04396 1.22708 0.89745 0.94200 0.97226 1.22606 0.92307 0.97158 0.90708 1.45115 1.36316 1.50516 1.08246 1.16417 0.82179 0.80387 0.83015 1.90879 1.34575 1.42913 1.84650 1.20720 0.98075 0.93621 0.98283 1.21205 1.00892 0.96583 1.03038 0.90243 0.87786 0.84876 0.92359 0.86921 0.87084 0.89973 0.88687 0.86745 0.72602 0.90400 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.87 10.97 21.83 0.24 -45.64 16 2 C 0.03 1.65 5.14 85.26 0.44 2.09 16 3 Si 0.98 39.56 29.59 68.60 2.03 41.59 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.82 9.05 23.46 0.21 -27.60 16 8 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.08 4.59 5.57 -21.29 -0.12 4.47 16 10 C -0.24 -11.75 9.80 22.73 0.22 -11.53 16 11 C -0.07 -2.69 9.67 22.22 0.21 -2.47 16 12 C -0.23 -9.89 5.49 -19.67 -0.11 -10.00 16 13 C 0.21 7.30 6.11 85.63 0.52 7.83 16 14 N -0.63 -19.30 2.94 -842.74 -2.48 -21.78 16 15 C 0.08 1.56 7.68 86.65 0.67 2.22 16 16 C 0.10 1.40 8.06 86.65 0.70 2.10 16 17 N -0.74 -17.87 6.37 -477.33 -3.04 -20.92 16 18 C 0.68 24.27 8.60 179.57 1.54 25.81 16 19 O -0.65 -30.29 17.53 -3.96 -0.07 -30.36 16 20 C -0.09 -4.59 9.67 22.22 0.21 -4.37 16 21 C -0.20 -11.35 8.70 22.73 0.20 -11.15 16 22 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 23 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 24 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 25 H 0.06 2.19 7.85 -2.39 -0.02 2.17 16 26 H 0.11 2.89 8.08 -2.39 -0.02 2.87 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.43 8.82 8.96 -92.71 -0.83 7.99 16 32 H 0.08 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.09 5.49 6.18 -2.91 -0.02 5.47 16 Total: -1.00 -75.47 286.28 1.68 -73.79 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.29 Total: 25.92 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.71 Total: -22.60 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -5.28 Total: -88.33 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.07 Total: -30.36 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -75.47 1.68 -73.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399209973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.766 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds