Wall clock time and date at job start Mon Mar 30 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 C 1.50697 * 109.47275 * 239.99888 * 2 1 3 5 5 H 1.07998 * 120.00094 * 240.00489 * 4 2 1 6 6 C 1.37882 * 120.00175 * 59.99972 * 4 2 1 7 7 N 1.31520 * 119.99555 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00237 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47066 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47120 * 120.00280 * 8 6 4 11 11 H 1.48503 * 109.47195 * 240.00153 * 8 6 4 12 12 C 1.50699 * 109.47082 * 119.99651 * 2 1 3 13 13 N 1.30964 * 126.44939 * 240.02721 * 12 2 1 14 14 C 1.35193 * 105.58300 * 180.02562 * 13 12 2 15 15 C 1.48548 * 126.41104 * 179.97438 * 14 13 12 16 16 N 1.32513 * 119.20109 * 359.70408 * 15 14 13 17 17 C 1.32188 * 120.74635 * 179.71509 * 16 15 14 18 18 C 1.38710 * 119.18379 * 0.54669 * 17 16 15 19 19 C 1.38700 * 118.53935 * 359.73065 * 18 17 16 20 20 N 1.32187 * 119.18621 * 359.97438 * 19 18 17 21 21 N 1.30686 * 107.18590 * 359.97438 * 14 13 12 22 22 O 1.21293 * 110.11360 * 0.02562 * 21 14 13 23 23 H 1.09006 * 109.46735 * 59.99935 * 1 2 3 24 24 H 1.08996 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47380 * 300.00531 * 1 2 3 26 26 H 0.96997 * 119.99459 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.40437 * 180.28080 * 17 16 15 28 28 H 1.08003 * 120.72537 * 179.75129 * 18 17 16 29 29 H 1.08004 * 120.41110 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0323 -0.7103 1.2305 13 7 2.7879 -0.1990 2.1701 14 6 2.9826 -1.1960 3.0622 15 6 3.7781 -1.1160 4.3142 16 7 4.3789 0.0230 4.6268 17 6 5.0897 0.1298 5.7361 18 6 5.2113 -0.9718 6.5703 19 6 4.5739 -2.1496 6.2096 20 7 3.8737 -2.1866 5.0890 21 7 2.3402 -2.2434 2.6171 22 8 1.7907 -1.9810 1.5681 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7096 1.1618 -3.4844 27 1 5.5734 1.0621 5.9877 28 1 5.7893 -0.9134 7.4807 29 1 4.6487 -3.0259 6.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594731918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:32 Heat of formation + Delta-G solvation = 117.913068 kcal Electronic energy + Delta-G solvation = -16693.266670 eV Core-core repulsion = 13813.326458 eV Total energy + Delta-G solvation = -2879.940212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.86952 -41.05955 -35.42895 -34.82290 -33.94320 -32.59900 -31.50912 -29.67425 -25.64887 -25.38709 -24.81110 -23.27448 -22.58362 -20.44130 -17.92396 -17.50801 -17.33093 -16.46641 -16.01080 -15.55157 -14.97253 -14.94611 -14.12581 -13.79547 -13.66189 -12.93808 -11.95833 -11.75215 -11.45459 -11.15343 -11.11108 -11.05073 -11.03230 -10.68531 -10.46041 -10.34189 -10.13135 -9.93321 -9.37334 -9.34867 -8.87546 -8.57324 -6.21823 -4.31037 0.38329 0.93469 1.95554 2.82134 3.13004 3.23777 3.32002 3.37420 3.73413 3.79903 3.80452 4.30385 4.36359 4.63430 4.85382 4.86043 4.93566 5.12845 5.52380 5.64170 6.06079 6.37421 6.50213 6.62266 6.78712 6.85124 6.85888 7.38377 7.62559 7.80366 7.87202 8.00025 8.68173 8.81957 9.35286 10.84498 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043689 B = 0.004924 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.745698 B = 5684.951916 C = 5717.071485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.125 3.875 3 H 0.079 0.921 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.243 3.757 13 N -0.478 5.478 14 C 0.198 3.802 15 C 0.413 3.587 16 N -0.478 5.478 17 C 0.150 3.850 18 C -0.227 4.227 19 C 0.149 3.851 20 N -0.493 5.493 21 N -0.358 5.358 22 O 0.088 5.912 23 H 0.102 0.898 24 H 0.040 0.960 25 H 0.018 0.982 26 H 0.266 0.734 27 H 0.176 0.824 28 H 0.152 0.848 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 -2.126 14.613 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.105 3.895 3 H 0.096 0.904 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.211 5.211 14 C -0.074 4.074 15 C 0.146 3.854 16 N -0.193 5.193 17 C -0.016 4.016 18 C -0.250 4.250 19 C -0.017 4.017 20 N -0.208 5.208 21 N -0.065 5.065 22 O 0.024 5.976 23 H 0.120 0.880 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.193 0.807 28 H 0.170 0.830 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.309 -2.501 14.273 15.432 hybrid contribution 0.883 -0.335 -0.026 0.945 sum 6.192 -2.836 14.246 15.790 Atomic orbital electron populations 1.21872 0.95395 1.00785 1.01762 1.17901 0.93942 0.95389 0.82294 0.90381 1.20919 1.32934 1.13252 0.89129 0.91795 1.24876 0.94514 0.94838 0.99065 1.69864 1.35710 1.22338 1.24176 0.86324 0.78760 0.79657 0.82115 1.19552 1.20621 1.20729 1.30326 0.89719 0.80546 0.96925 1.72170 1.18082 1.28037 1.02772 1.22501 1.01397 0.87393 0.96097 1.19059 0.91298 0.85007 0.90007 1.68338 1.07606 1.25670 1.17660 1.23365 0.91517 0.98928 0.87831 1.23058 1.03148 0.95711 1.03088 1.23276 0.89195 0.97856 0.91403 1.68275 1.17496 1.29839 1.05210 1.74926 1.11088 1.22460 0.98040 1.85323 1.53536 1.30984 1.27735 0.87956 0.94052 0.96297 0.92363 0.80714 0.82994 0.80838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.95 37.16 0.33 -2.83 15 2 C 0.13 3.06 2.77 -92.92 -0.26 2.80 15 3 H 0.08 2.02 8.14 -51.93 -0.42 1.60 15 4 C -0.52 -13.78 8.55 -34.44 -0.29 -14.07 15 5 H 0.06 1.70 7.74 -52.49 -0.41 1.30 15 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 15 7 N -0.88 -23.46 11.32 55.43 0.63 -22.84 15 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 12 C 0.24 5.70 6.94 -13.00 -0.09 5.61 15 13 N -0.48 -11.16 11.55 -9.89 -0.11 -11.28 15 14 C 0.20 4.33 7.99 -156.15 -1.25 3.08 15 15 C 0.41 7.74 7.60 -156.99 -1.19 6.55 15 16 N -0.48 -8.02 10.34 -11.10 -0.11 -8.13 15 17 C 0.15 1.66 11.30 -17.22 -0.19 1.47 15 18 C -0.23 -1.95 10.17 -39.24 -0.40 -2.35 15 19 C 0.15 1.61 11.30 -17.23 -0.19 1.41 15 20 N -0.49 -8.02 10.33 -11.10 -0.11 -8.14 15 21 N -0.36 -7.98 12.16 30.96 0.38 -7.60 15 22 O 0.09 2.01 11.29 18.01 0.20 2.22 15 23 H 0.10 2.48 6.07 -51.93 -0.32 2.16 15 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 15 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 27 H 0.18 1.23 8.06 -52.48 -0.42 0.81 15 28 H 0.15 0.65 8.06 -52.48 -0.42 0.22 15 29 H 0.17 1.15 8.06 -52.48 -0.42 0.73 15 LS Contribution 269.45 15.07 4.06 4.06 Total: -1.00 -30.67 269.45 -6.12 -36.79 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -2.39 Total: -3.90 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.63 Total: 3.42 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.66 Total: -57.98 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.20 Total: 2.22 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.67 -6.12 -36.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594731918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.708 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds