Wall clock time and date at job start Mon Mar 30 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 C 1.50697 * 109.47275 * 239.99888 * 2 1 3 5 5 H 1.07998 * 120.00094 * 240.00489 * 4 2 1 6 6 C 1.37882 * 120.00175 * 59.99972 * 4 2 1 7 7 N 1.31520 * 119.99555 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00237 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47066 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47120 * 120.00280 * 8 6 4 11 11 H 1.48503 * 109.47195 * 240.00153 * 8 6 4 12 12 C 1.50699 * 109.47082 * 119.99651 * 2 1 3 13 13 N 1.30964 * 126.44939 * 240.02721 * 12 2 1 14 14 C 1.35193 * 105.58300 * 180.02562 * 13 12 2 15 15 C 1.48548 * 126.41104 * 179.97438 * 14 13 12 16 16 N 1.32513 * 119.20109 * 359.70408 * 15 14 13 17 17 C 1.32188 * 120.74635 * 179.71509 * 16 15 14 18 18 C 1.38710 * 119.18379 * 0.54669 * 17 16 15 19 19 C 1.38700 * 118.53935 * 359.73065 * 18 17 16 20 20 N 1.32187 * 119.18621 * 359.97438 * 19 18 17 21 21 N 1.30686 * 107.18590 * 359.97438 * 14 13 12 22 22 O 1.21293 * 110.11360 * 0.02562 * 21 14 13 23 23 H 1.09006 * 109.46735 * 59.99935 * 1 2 3 24 24 H 1.08996 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47380 * 300.00531 * 1 2 3 26 26 H 0.96997 * 119.99459 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.40437 * 180.28080 * 17 16 15 28 28 H 1.08003 * 120.72537 * 179.75129 * 18 17 16 29 29 H 1.08004 * 120.41110 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0323 -0.7103 1.2305 13 7 2.7879 -0.1990 2.1701 14 6 2.9826 -1.1960 3.0622 15 6 3.7781 -1.1160 4.3142 16 7 4.3789 0.0230 4.6268 17 6 5.0897 0.1298 5.7361 18 6 5.2113 -0.9718 6.5703 19 6 4.5739 -2.1496 6.2096 20 7 3.8737 -2.1866 5.0890 21 7 2.3402 -2.2434 2.6171 22 8 1.7907 -1.9810 1.5681 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7096 1.1618 -3.4844 27 1 5.5734 1.0621 5.9877 28 1 5.7893 -0.9134 7.4807 29 1 4.6487 -3.0259 6.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594731918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:32 Heat of formation + Delta-G solvation = 95.800828 kcal Electronic energy + Delta-G solvation = -16694.225529 eV Core-core repulsion = 13813.326458 eV Total energy + Delta-G solvation = -2880.899071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.58869 -42.06377 -37.20454 -36.60631 -34.97966 -34.15300 -32.91891 -31.45690 -27.36879 -26.94379 -25.91262 -24.90775 -24.10113 -22.07890 -19.45245 -19.05960 -18.52325 -18.10262 -17.67513 -16.82341 -16.46415 -16.07096 -15.63606 -15.26716 -14.79007 -14.50905 -13.79913 -13.56869 -13.16721 -12.91120 -12.86040 -12.54529 -12.29633 -12.19625 -12.12078 -12.07330 -11.94728 -11.56085 -11.00219 -10.57331 -10.39263 -10.37203 -8.21632 -6.38128 -0.74157 0.06711 0.28887 1.24245 1.44905 1.47709 1.58902 1.79034 1.97798 2.40860 2.63471 2.70954 3.08868 3.40368 3.56522 3.67127 3.98908 4.09211 4.35173 4.57994 4.67555 4.76647 4.81765 4.92753 5.00249 5.26371 5.41249 5.65197 5.83362 5.90759 6.03822 6.63514 6.82345 7.09381 7.31072 8.84581 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043689 B = 0.004924 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.745698 B = 5684.951916 C = 5717.071485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.128 3.872 3 H 0.057 0.943 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.032 3.968 7 N -0.903 5.903 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.276 1.276 12 C 0.237 3.763 13 N -0.494 5.494 14 C 0.203 3.797 15 C 0.368 3.632 16 N -0.512 5.512 17 C 0.136 3.864 18 C -0.181 4.181 19 C 0.137 3.863 20 N -0.520 5.520 21 N -0.371 5.371 22 O 0.077 5.923 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.035 0.965 26 H 0.271 0.729 27 H 0.215 0.785 28 H 0.211 0.789 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -2.470 16.707 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.108 3.892 3 H 0.075 0.925 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.169 4.169 7 N -0.540 5.540 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.202 1.202 12 C 0.019 3.981 13 N -0.228 5.228 14 C -0.069 4.069 15 C 0.101 3.899 16 N -0.229 5.229 17 C -0.029 4.029 18 C -0.203 4.203 19 C -0.028 4.028 20 N -0.236 5.236 21 N -0.081 5.081 22 O 0.017 5.983 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.232 0.768 28 H 0.228 0.772 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.832 -2.846 16.368 17.963 hybrid contribution 0.551 -0.194 -0.422 0.720 sum 7.383 -3.040 15.946 17.833 Atomic orbital electron populations 1.21725 0.94135 1.01046 1.01812 1.17722 0.94937 0.94202 0.82380 0.92471 1.21072 1.33521 1.13365 0.90349 0.92900 1.25570 0.94515 0.95436 1.01423 1.69944 1.35995 1.23026 1.25080 0.85404 0.78425 0.78467 0.78791 1.19865 1.19598 1.20161 1.30070 0.90189 0.80984 0.96893 1.72143 1.18330 1.28975 1.03324 1.23194 1.00505 0.86311 0.96871 1.18713 0.94041 0.86888 0.90273 1.68222 1.08795 1.25393 1.20443 1.24190 0.90632 1.01525 0.86555 1.23670 1.00003 0.93293 1.03328 1.24159 0.88153 1.00419 0.90063 1.68185 1.19043 1.29426 1.06957 1.74871 1.12217 1.22862 0.98111 1.85289 1.54100 1.30597 1.28308 0.89418 0.93616 0.94559 0.91904 0.76838 0.77202 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.95 71.98 0.64 -5.32 15 2 C 0.13 6.50 2.77 -12.29 -0.03 6.47 15 3 H 0.06 3.10 8.14 -2.38 -0.02 3.08 15 4 C -0.54 -29.45 8.55 25.60 0.22 -29.23 15 5 H 0.05 2.91 7.74 -2.91 -0.02 2.89 15 6 C 0.03 1.69 5.30 84.65 0.45 2.14 15 7 N -0.90 -48.43 11.32 21.45 0.24 -48.19 15 8 Si 0.96 42.01 29.54 68.60 2.03 44.04 15 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 10 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 12 C 0.24 11.59 6.94 88.36 0.61 12.20 15 13 N -0.49 -24.00 11.55 -302.61 -3.50 -27.49 15 14 C 0.20 9.21 7.99 137.36 1.10 10.31 15 15 C 0.37 13.84 7.60 137.66 1.05 14.89 15 16 N -0.51 -16.81 10.34 -189.04 -1.95 -18.76 15 17 C 0.14 2.55 11.30 84.75 0.96 3.51 15 18 C -0.18 -2.18 10.17 22.49 0.23 -1.95 15 19 C 0.14 2.45 11.30 84.75 0.96 3.40 15 20 N -0.52 -16.38 10.33 -189.04 -1.95 -18.34 15 21 N -0.37 -17.11 12.16 -59.24 -0.72 -17.83 15 22 O 0.08 3.65 11.29 74.52 0.84 4.49 15 23 H 0.09 4.34 6.07 -2.38 -0.01 4.32 15 24 H 0.04 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 26 H 0.27 13.65 8.31 -92.71 -0.77 12.88 15 27 H 0.22 2.07 8.06 -2.91 -0.02 2.05 15 28 H 0.21 0.12 8.06 -2.91 -0.02 0.09 15 29 H 0.22 1.79 8.06 -2.91 -0.02 1.77 15 Total: -1.00 -70.39 269.45 2.35 -68.04 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: 1.18 Total: -2.37 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 6.18 Total: 16.42 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -7.88 Total: -130.61 kcal Atomic # 8 Polarization: 3.65 SS G_CDS: 0.84 Total: 4.49 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.39 2.35 -68.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594731918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.837 kcal (2) G-P(sol) polarization free energy of solvation -70.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds