Wall clock time and date at job start Mon Mar 30 2020 03:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.50697 * 109.47133 * 120.00048 * 2 1 3 5 5 H 1.08003 * 119.99964 * 114.35793 * 4 2 1 6 6 C 1.37881 * 120.00111 * 294.35932 * 4 2 1 7 7 N 1.31514 * 120.00066 * 156.87356 * 6 4 2 8 8 Si 1.86804 * 119.99737 * 336.87258 * 6 4 2 9 9 H 1.48500 * 109.46961 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.46797 * 60.00041 * 8 6 4 11 11 H 1.48505 * 109.46826 * 300.00052 * 8 6 4 12 12 C 1.50701 * 109.46759 * 239.99867 * 2 1 3 13 13 N 1.30977 * 126.44473 * 120.00467 * 12 2 1 14 14 C 1.35189 * 105.57692 * 179.97438 * 13 12 2 15 15 C 1.48550 * 126.40155 * 180.02562 * 14 13 12 16 16 N 1.32507 * 119.20833 * 359.73109 * 15 14 13 17 17 C 1.32186 * 120.75101 * 179.76270 * 16 15 14 18 18 C 1.38699 * 119.18435 * 0.49971 * 17 16 15 19 19 C 1.38710 * 118.54123 * 359.75434 * 18 17 16 20 20 N 1.32180 * 119.18028 * 359.97438 * 19 18 17 21 21 N 1.30681 * 107.18975 * 359.97438 * 14 13 12 22 22 O 1.21287 * 110.11164 * 359.70404 * 21 14 13 23 23 H 1.08997 * 109.47662 * 53.17723 * 1 2 3 24 24 H 1.09003 * 109.47433 * 173.17554 * 1 2 3 25 25 H 1.09003 * 109.47338 * 293.17451 * 1 2 3 26 26 H 0.96997 * 120.00502 * 354.93099 * 7 6 4 27 27 H 1.07997 * 120.40629 * 180.25652 * 17 16 15 28 28 H 1.08001 * 120.73289 * 179.77630 * 18 17 16 29 29 H 1.08005 * 120.41019 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6386 1.1339 6 6 1.7977 -0.1755 2.4794 7 7 1.8077 -0.9528 3.5402 8 14 1.4659 1.6535 2.6648 9 1 1.2472 1.9741 4.0982 10 1 0.2559 2.0184 1.8851 11 1 2.6315 2.4218 2.1584 12 6 2.0322 -0.7105 -1.2305 13 7 2.7883 -0.1993 -2.1699 14 6 2.9827 -1.1963 -3.0620 15 6 3.7785 -1.1163 -4.3139 16 7 4.3706 0.0256 -4.6318 17 6 5.0899 0.1295 -5.7360 18 6 5.2117 -0.9721 -6.5699 19 6 4.5744 -2.1501 -6.2092 20 7 3.8751 -2.1873 -5.0881 21 7 2.3406 -2.2437 -2.6167 22 8 1.7959 -1.9829 -1.5648 23 1 -0.3634 0.6159 -0.8226 24 1 -0.3634 -1.0204 -0.1221 25 1 -0.3634 0.4044 0.9448 26 1 1.9067 -1.9122 3.4375 27 1 5.5735 1.0618 -5.9876 28 1 5.7902 -0.9140 -7.4800 29 1 4.6488 -3.0262 -6.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594731919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:35 Heat of formation + Delta-G solvation = 118.525852 kcal Electronic energy + Delta-G solvation = -16739.148415 eV Core-core repulsion = 13859.234775 eV Total energy + Delta-G solvation = -2879.913640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.99198 -41.11553 -35.56914 -34.95057 -33.99779 -32.65815 -31.72938 -30.15531 -25.72992 -25.12314 -24.81633 -23.33997 -22.61230 -20.35326 -18.08871 -17.66713 -17.41954 -17.18212 -16.32982 -15.61610 -15.03204 -14.78889 -14.19312 -13.78137 -13.64804 -12.95101 -12.42005 -11.96052 -11.69511 -11.45947 -11.37202 -11.15372 -11.10329 -10.63837 -10.52468 -10.16099 -10.05804 -9.91717 -9.42582 -9.31020 -9.01450 -8.37916 -6.66744 -4.28922 0.32340 0.88375 1.84578 2.71269 3.05024 3.32643 3.40721 3.49896 3.63671 3.72979 3.74046 4.31721 4.38224 4.56192 4.74483 4.81181 4.85172 5.05787 5.42290 5.55946 5.98764 6.09925 6.20214 6.31517 6.45322 6.53158 6.76154 6.83970 7.13465 7.65354 7.81422 8.20843 8.65832 8.70230 9.37485 10.72480 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043413 B = 0.005266 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.808309 B = 5315.912164 C = 5580.915818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.103 3.897 3 H 0.069 0.931 4 C -0.617 4.617 5 H 0.064 0.936 6 C 0.049 3.951 7 N -0.883 5.883 8 Si 1.031 2.969 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.248 3.752 13 N -0.476 5.476 14 C 0.200 3.800 15 C 0.412 3.588 16 N -0.478 5.478 17 C 0.151 3.849 18 C -0.226 4.226 19 C 0.150 3.850 20 N -0.493 5.493 21 N -0.355 5.355 22 O 0.091 5.909 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.274 0.726 27 H 0.176 0.824 28 H 0.153 0.847 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 1.837 -17.694 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 H 0.087 0.913 4 C -0.655 4.655 5 H 0.083 0.917 6 C -0.160 4.160 7 N -0.514 5.514 8 Si 0.858 3.142 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.029 3.971 13 N -0.209 5.209 14 C -0.071 4.071 15 C 0.145 3.855 16 N -0.193 5.193 17 C -0.016 4.016 18 C -0.249 4.249 19 C -0.017 4.017 20 N -0.208 5.208 21 N -0.062 5.062 22 O 0.027 5.973 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.193 0.807 28 H 0.171 0.829 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.319 2.508 -16.353 16.874 hybrid contribution 0.943 -1.250 -1.906 2.467 sum 4.262 1.258 -18.259 18.792 Atomic orbital electron populations 1.22236 0.95939 1.01343 1.01166 1.18082 0.93434 0.95464 0.84823 0.91329 1.21699 1.42826 1.11216 0.89752 0.91750 1.25714 0.92792 1.05994 0.91457 1.70839 1.42022 1.06802 1.31696 0.84219 0.77738 0.75496 0.76788 1.20586 1.19750 1.20316 1.29720 0.90212 0.80747 0.96377 1.72153 1.17799 1.28180 1.02779 1.22487 1.01285 0.87307 0.96062 1.19027 0.91458 0.85033 0.89977 1.68320 1.07647 1.25674 1.17665 1.23361 0.91410 0.98975 0.87873 1.23069 1.03094 0.95670 1.03037 1.23287 0.89154 0.97864 0.91372 1.68267 1.17412 1.29879 1.05224 1.74941 1.11151 1.22375 0.97702 1.85323 1.53857 1.30542 1.27601 0.94812 0.92594 0.91022 0.91588 0.80666 0.82928 0.80775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.90 37.15 0.33 -2.71 15 2 C 0.10 2.39 2.37 -92.93 -0.22 2.17 15 3 H 0.07 1.57 6.72 -51.93 -0.35 1.22 15 4 C -0.62 -16.57 8.75 -34.44 -0.30 -16.87 15 5 H 0.06 1.89 7.99 -52.48 -0.42 1.47 15 6 C 0.05 1.32 5.20 -17.82 -0.09 1.23 15 7 N -0.88 -25.56 13.70 55.43 0.76 -24.80 15 8 Si 1.03 23.22 26.44 -169.99 -4.50 18.72 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 10 H -0.27 -5.51 6.15 56.52 0.35 -5.17 15 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 12 C 0.25 5.70 6.94 -13.00 -0.09 5.61 15 13 N -0.48 -10.86 11.55 -9.90 -0.11 -10.98 15 14 C 0.20 4.32 7.99 -156.15 -1.25 3.07 15 15 C 0.41 7.59 7.60 -156.98 -1.19 6.40 15 16 N -0.48 -7.84 10.34 -11.11 -0.11 -7.95 15 17 C 0.15 1.61 11.30 -17.23 -0.19 1.42 15 18 C -0.23 -1.88 10.17 -39.24 -0.40 -2.28 15 19 C 0.15 1.58 11.30 -17.23 -0.19 1.38 15 20 N -0.49 -7.91 10.33 -11.10 -0.11 -8.02 15 21 N -0.35 -7.85 12.16 30.95 0.38 -7.48 15 22 O 0.09 2.06 11.29 18.04 0.20 2.27 15 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.07 1.47 5.47 -51.93 -0.28 1.19 15 26 H 0.27 7.93 8.73 -40.82 -0.36 7.58 15 27 H 0.18 1.17 8.06 -52.49 -0.42 0.75 15 28 H 0.15 0.61 8.06 -52.49 -0.42 0.19 15 29 H 0.18 1.12 8.06 -52.48 -0.42 0.70 15 LS Contribution 266.05 15.07 4.01 4.01 Total: -1.00 -32.17 266.05 -5.47 -37.63 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -2.37 Total: -2.84 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.60 Total: -0.56 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.79 Total: -59.23 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.20 Total: 2.27 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.50 Total: 18.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.17 -5.47 -37.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594731919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.158 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds