Wall clock time and date at job start Mon Mar 30 2020 03:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.50697 * 109.47133 * 120.00048 * 2 1 3 5 5 H 1.08003 * 119.99964 * 114.35793 * 4 2 1 6 6 C 1.37881 * 120.00111 * 294.35932 * 4 2 1 7 7 N 1.31514 * 120.00066 * 156.87356 * 6 4 2 8 8 Si 1.86804 * 119.99737 * 336.87258 * 6 4 2 9 9 H 1.48500 * 109.46961 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.46797 * 60.00041 * 8 6 4 11 11 H 1.48505 * 109.46826 * 300.00052 * 8 6 4 12 12 C 1.50701 * 109.46759 * 239.99867 * 2 1 3 13 13 N 1.30977 * 126.44473 * 120.00467 * 12 2 1 14 14 C 1.35189 * 105.57692 * 179.97438 * 13 12 2 15 15 C 1.48550 * 126.40155 * 180.02562 * 14 13 12 16 16 N 1.32507 * 119.20833 * 359.73109 * 15 14 13 17 17 C 1.32186 * 120.75101 * 179.76270 * 16 15 14 18 18 C 1.38699 * 119.18435 * 0.49971 * 17 16 15 19 19 C 1.38710 * 118.54123 * 359.75434 * 18 17 16 20 20 N 1.32180 * 119.18028 * 359.97438 * 19 18 17 21 21 N 1.30681 * 107.18975 * 359.97438 * 14 13 12 22 22 O 1.21287 * 110.11164 * 359.70404 * 21 14 13 23 23 H 1.08997 * 109.47662 * 53.17723 * 1 2 3 24 24 H 1.09003 * 109.47433 * 173.17554 * 1 2 3 25 25 H 1.09003 * 109.47338 * 293.17451 * 1 2 3 26 26 H 0.96997 * 120.00502 * 354.93099 * 7 6 4 27 27 H 1.07997 * 120.40629 * 180.25652 * 17 16 15 28 28 H 1.08001 * 120.73289 * 179.77630 * 18 17 16 29 29 H 1.08005 * 120.41019 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6386 1.1339 6 6 1.7977 -0.1755 2.4794 7 7 1.8077 -0.9528 3.5402 8 14 1.4659 1.6535 2.6648 9 1 1.2472 1.9741 4.0982 10 1 0.2559 2.0184 1.8851 11 1 2.6315 2.4218 2.1584 12 6 2.0322 -0.7105 -1.2305 13 7 2.7883 -0.1993 -2.1699 14 6 2.9827 -1.1963 -3.0620 15 6 3.7785 -1.1163 -4.3139 16 7 4.3706 0.0256 -4.6318 17 6 5.0899 0.1295 -5.7360 18 6 5.2117 -0.9721 -6.5699 19 6 4.5744 -2.1501 -6.2092 20 7 3.8751 -2.1873 -5.0881 21 7 2.3406 -2.2437 -2.6167 22 8 1.7959 -1.9829 -1.5648 23 1 -0.3634 0.6159 -0.8226 24 1 -0.3634 -1.0204 -0.1221 25 1 -0.3634 0.4044 0.9448 26 1 1.9067 -1.9122 3.4375 27 1 5.5735 1.0618 -5.9876 28 1 5.7902 -0.9140 -7.4800 29 1 4.6488 -3.0262 -6.8365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594731919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:35 Heat of formation + Delta-G solvation = 93.509519 kcal Electronic energy + Delta-G solvation = -16740.233204 eV Core-core repulsion = 13859.234775 eV Total energy + Delta-G solvation = -2880.998429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.68019 -42.09435 -37.31360 -36.68929 -35.00929 -34.31163 -33.13536 -31.82223 -27.02235 -26.95282 -25.95268 -24.93218 -24.10608 -21.97339 -19.90773 -19.16249 -18.93748 -18.45771 -17.73226 -16.63589 -16.49150 -16.10922 -15.42858 -15.32093 -14.71556 -14.54202 -14.38849 -13.67509 -13.50533 -13.11471 -13.02897 -12.40847 -12.26393 -12.14732 -12.08832 -11.90498 -11.65061 -11.56636 -11.08181 -10.47948 -10.42939 -10.42112 -8.85014 -6.47422 -0.78316 0.04107 0.21163 1.17343 1.54931 1.61713 1.70088 1.79681 1.93031 2.50912 2.55046 2.67856 2.96798 3.31614 3.51604 3.64740 3.90984 4.06758 4.28248 4.40519 4.51003 4.56009 4.73672 4.76861 4.86156 5.09647 5.23897 5.44614 5.67605 5.87895 5.96058 6.41811 6.78163 7.01018 7.27663 8.53557 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043413 B = 0.005266 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.808309 B = 5315.912164 C = 5580.915818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.103 3.897 3 H 0.080 0.920 4 C -0.623 4.623 5 H 0.020 0.980 6 C 0.006 3.994 7 N -0.914 5.914 8 Si 1.070 2.930 9 H -0.284 1.284 10 H -0.229 1.229 11 H -0.265 1.265 12 C 0.239 3.761 13 N -0.487 5.487 14 C 0.206 3.794 15 C 0.367 3.633 16 N -0.510 5.510 17 C 0.137 3.863 18 C -0.180 4.180 19 C 0.136 3.864 20 N -0.521 5.521 21 N -0.371 5.371 22 O 0.072 5.928 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.258 0.742 27 H 0.217 0.783 28 H 0.211 0.789 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 3.697 -20.970 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.082 3.918 3 H 0.098 0.902 4 C -0.661 4.661 5 H 0.038 0.962 6 C -0.196 4.196 7 N -0.546 5.546 8 Si 0.889 3.111 9 H -0.210 1.210 10 H -0.153 1.153 11 H -0.190 1.190 12 C 0.020 3.980 13 N -0.221 5.221 14 C -0.066 4.066 15 C 0.099 3.901 16 N -0.226 5.226 17 C -0.028 4.028 18 C -0.202 4.202 19 C -0.028 4.028 20 N -0.238 5.238 21 N -0.082 5.082 22 O 0.013 5.987 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.233 0.767 28 H 0.228 0.772 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.048 4.346 -19.648 20.526 hybrid contribution 0.918 -1.911 -1.150 2.412 sum 4.966 2.435 -20.798 21.520 Atomic orbital electron populations 1.22145 0.93462 1.01999 1.02558 1.18066 0.95289 0.95299 0.83165 0.90221 1.21743 1.42456 1.09896 0.91980 0.96157 1.27169 0.91765 1.09774 0.90907 1.70965 1.44781 1.06089 1.32767 0.83778 0.79889 0.70159 0.77307 1.20969 1.15265 1.18987 1.29710 0.90628 0.81005 0.96675 1.72125 1.17801 1.28949 1.03208 1.23201 1.00294 0.86282 0.96838 1.18692 0.94226 0.86910 0.90231 1.68212 1.08788 1.25259 1.20342 1.24204 0.90469 1.01558 0.86573 1.23681 0.99945 0.93257 1.03302 1.24154 0.88189 1.00440 0.90052 1.68175 1.18997 1.29597 1.07003 1.74896 1.12454 1.22967 0.97842 1.85289 1.54568 1.30571 1.28249 0.91602 0.92965 0.90792 0.93296 0.76665 0.77171 0.76693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.90 71.98 0.64 -5.05 15 2 C 0.10 4.78 2.37 -12.29 -0.03 4.76 15 3 H 0.08 3.54 6.72 -2.39 -0.02 3.52 15 4 C -0.62 -34.62 8.75 25.60 0.22 -34.39 15 5 H 0.02 1.27 7.99 -2.91 -0.02 1.24 15 6 C 0.01 0.31 5.20 84.66 0.44 0.75 15 7 N -0.91 -54.75 13.70 21.45 0.29 -54.46 15 8 Si 1.07 45.75 26.44 68.60 1.81 47.57 15 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 10 H -0.23 -8.26 6.15 99.48 0.61 -7.65 15 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 12 C 0.24 11.26 6.94 88.36 0.61 11.88 15 13 N -0.49 -22.69 11.55 -302.66 -3.50 -26.19 15 14 C 0.21 9.15 7.99 137.37 1.10 10.25 15 15 C 0.37 13.49 7.60 137.66 1.05 14.53 15 16 N -0.51 -16.09 10.34 -189.05 -1.95 -18.05 15 17 C 0.14 2.43 11.30 84.75 0.96 3.39 15 18 C -0.18 -2.04 10.17 22.49 0.23 -1.82 15 19 C 0.14 2.39 11.30 84.75 0.96 3.34 15 20 N -0.52 -16.24 10.33 -189.04 -1.95 -18.19 15 21 N -0.37 -17.12 12.16 -59.29 -0.72 -17.84 15 22 O 0.07 3.44 11.29 74.62 0.84 4.29 15 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.07 2.88 5.47 -2.39 -0.01 2.87 15 26 H 0.26 15.81 8.73 -92.71 -0.81 15.00 15 27 H 0.22 1.83 8.06 -2.91 -0.02 1.81 15 28 H 0.21 -0.01 8.06 -2.91 -0.02 -0.03 15 29 H 0.22 1.75 8.06 -2.91 -0.02 1.72 15 Total: -1.00 -76.23 266.05 2.06 -74.18 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.05 Total: 1.05 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.18 Total: 7.64 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -7.83 Total: -134.72 kcal Atomic # 8 Polarization: 3.44 SS G_CDS: 0.84 Total: 4.29 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.81 Total: 47.57 kcal Total: -76.23 2.06 -74.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594731919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.686 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds