Wall clock time and date at job start Mon Mar 30 2020 04:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99898 * 2 1 4 4 H 1.08994 * 109.47367 * 30.00389 * 3 2 1 5 5 C 1.52999 * 109.46972 * 269.99907 * 3 2 1 6 6 S 1.81398 * 109.47088 * 65.00196 * 5 3 2 7 7 C 1.81402 * 103.00047 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.47102 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.53007 * 109.46868 * 150.00230 * 3 2 1 17 17 H 1.08998 * 110.80396 * 63.62647 * 16 3 2 18 18 C 1.54814 * 110.90659 * 299.99453 * 16 3 2 19 19 C 1.54099 * 104.18953 * 220.92535 * 18 16 3 20 20 O 1.43746 * 107.29129 * 357.97143 * 19 18 16 21 21 C 1.44382 * 106.97932 * 26.51559 * 20 19 18 22 22 H 1.08994 * 109.47043 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46625 * 300.00031 * 1 2 3 24 24 H 1.08992 * 109.47315 * 59.99673 * 1 2 3 25 25 H 1.08996 * 109.47357 * 305.00083 * 5 3 2 26 26 H 1.09002 * 109.47268 * 185.00333 * 5 3 2 27 27 H 1.09000 * 109.47112 * 59.99460 * 7 6 5 28 28 H 1.09007 * 109.46585 * 299.99935 * 7 6 5 29 29 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 30 30 H 1.08997 * 110.48807 * 339.60360 * 18 16 3 31 31 H 1.08996 * 110.48264 * 102.11421 * 18 16 3 32 32 H 1.08995 * 109.87945 * 117.39305 * 19 18 16 33 33 H 1.09001 * 109.87978 * 238.40309 * 19 18 16 34 34 H 1.09000 * 110.61978 * 201.43868 * 21 20 19 35 35 H 1.08997 * 110.61898 * 78.43369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 16 0.6064 1.9634 -2.2535 7 6 1.0532 2.5105 -3.9243 8 6 -0.1991 2.7181 -4.7366 9 1 -1.1669 2.5384 -4.2922 10 6 -0.1089 3.1313 -6.0488 11 7 1.0696 3.3498 -6.5900 12 14 -1.6609 3.3811 -7.0580 13 1 -2.8493 3.0702 -6.2237 14 1 -1.7322 4.7921 -7.5156 15 1 -1.6350 2.4791 -8.2374 16 6 3.3589 1.2632 0.7212 17 1 4.0629 0.6239 0.1886 18 6 3.1872 0.7951 2.1869 19 6 4.1364 1.7069 2.9883 20 8 4.8060 2.5607 2.0455 21 6 3.9345 2.6911 0.9018 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 2.8099 1.0320 -1.9815 26 1 2.7413 2.7273 -1.4439 27 1 1.6745 1.7523 -4.4010 28 1 1.6062 3.4480 -3.8639 29 1 1.1330 3.6402 -7.5133 30 1 2.1570 0.9353 2.5139 31 1 3.4806 -0.2495 2.2904 32 1 3.5638 2.3101 3.6928 33 1 4.8657 1.1013 3.5263 34 1 4.5007 2.9910 0.0200 35 1 3.1357 3.4037 1.1072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:41 Heat of formation + Delta-G solvation = -107.436123 kcal Electronic energy + Delta-G solvation = -15946.469488 eV Core-core repulsion = 13263.448945 eV Total energy + Delta-G solvation = -2683.020543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79256 -37.69734 -33.28933 -33.15257 -30.69554 -28.57927 -28.21089 -26.49945 -23.73374 -22.98160 -22.02256 -20.51534 -17.07716 -16.62298 -16.40146 -16.09561 -15.42486 -15.04302 -14.83706 -14.54410 -14.16404 -13.57979 -13.15881 -12.90072 -12.56114 -12.41806 -12.07916 -11.91895 -11.70516 -11.41108 -11.14614 -11.03625 -10.89737 -10.76072 -10.55110 -9.93537 -9.88957 -9.82879 -9.34706 -8.65428 -8.60901 -6.70447 -6.20697 -4.25020 2.55300 3.23625 3.30927 3.36719 3.74123 3.78067 3.83940 4.33981 4.43958 4.74363 4.79625 5.02577 5.07112 5.14774 5.16515 5.30255 5.39148 5.55581 5.59886 5.63948 5.65983 5.68911 5.82639 5.88768 6.00576 6.14820 6.25855 6.69499 7.08652 7.11261 7.33618 7.73484 8.00212 8.76957 9.38224 10.90702 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.041256 B = 0.004679 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.521540 B = 5982.303205 C = 6476.306811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.378 6.378 3 C 0.121 3.879 4 H 0.068 0.932 5 C -0.117 4.117 6 S -0.302 6.302 7 C 0.086 3.914 8 C -0.511 4.511 9 H 0.067 0.933 10 C 0.065 3.935 11 N -0.893 5.893 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.115 4.115 17 H 0.094 0.906 18 C -0.142 4.142 19 C 0.045 3.955 20 O -0.378 6.378 21 C 0.053 3.947 22 H 0.080 0.920 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -3.937 16.109 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.296 6.296 3 C 0.062 3.938 4 H 0.086 0.914 5 C -0.265 4.265 6 S -0.074 6.074 7 C -0.061 4.061 8 C -0.551 4.551 9 H 0.085 0.915 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.135 4.135 17 H 0.113 0.887 18 C -0.180 4.180 19 C -0.032 4.032 20 O -0.297 6.297 21 C -0.024 4.024 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.019 -4.118 16.383 17.160 hybrid contribution 0.071 0.459 -1.288 1.369 sum 3.090 -3.659 15.095 15.836 Atomic orbital electron populations 1.23167 0.80517 1.02588 1.01569 1.87828 1.20339 1.26562 1.94919 1.21722 0.93427 0.85626 0.93008 0.91358 1.23961 1.00350 1.03814 0.98387 1.86377 1.12346 1.89543 1.19163 1.21118 1.00286 0.98432 0.86223 1.20716 0.91854 1.46558 0.95935 0.91496 1.24971 0.96736 0.94889 0.97309 1.69962 1.23113 1.45817 1.14215 0.86307 0.82672 0.77888 0.79858 1.19439 1.20727 1.20724 1.22813 0.96807 0.97854 0.96059 0.88719 1.22875 1.00441 1.00708 0.94014 1.23190 0.95552 0.92163 0.92309 1.88874 1.42504 1.69021 1.29300 1.23615 0.93942 0.95328 0.89478 0.90136 0.94911 0.90378 0.90000 0.90087 0.94655 0.94745 0.92554 0.90597 0.90117 0.92486 0.89948 0.88360 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.57 101.05 1.07 1.33 16 2 O -0.38 -5.75 10.01 -35.23 -0.35 -6.10 16 3 C 0.12 1.70 1.75 -26.73 -0.05 1.66 16 4 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 5 C -0.12 -1.95 5.56 37.16 0.21 -1.74 16 6 S -0.30 -6.37 18.39 -107.50 -1.98 -8.35 16 7 C 0.09 2.23 5.70 36.01 0.21 2.43 16 8 C -0.51 -14.39 9.13 -34.44 -0.31 -14.71 16 9 H 0.07 1.88 7.71 -52.49 -0.40 1.48 16 10 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 12 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.11 -1.36 2.88 -88.60 -0.25 -1.62 16 17 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.14 -1.44 6.31 -25.20 -0.16 -1.60 16 19 C 0.04 0.44 7.70 37.73 0.29 0.73 16 20 O -0.38 -4.73 11.52 -35.23 -0.41 -5.13 16 21 C 0.05 0.61 6.36 38.22 0.24 0.85 16 22 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.03 0.40 8.09 -51.92 -0.42 -0.02 16 24 H 0.08 1.29 4.87 -37.59 -0.18 1.10 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.27 7.27 -51.92 -0.38 0.89 16 27 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.08 7.97 -51.93 -0.41 0.67 16 35 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -30.00 298.43 -6.92 -36.92 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.54 Total: -1.88 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 1.14 Total: -10.95 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.30 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.76 Total: -11.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -1.98 Total: -8.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.00 -6.92 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.514 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds