Wall clock time and date at job start Mon Mar 30 2020 04:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99898 * 2 1 4 4 H 1.08994 * 109.47367 * 30.00389 * 3 2 1 5 5 C 1.52999 * 109.46972 * 269.99907 * 3 2 1 6 6 S 1.81398 * 109.47088 * 65.00196 * 5 3 2 7 7 C 1.81402 * 103.00047 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.47102 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.53007 * 109.46868 * 150.00230 * 3 2 1 17 17 H 1.08998 * 110.80396 * 63.62647 * 16 3 2 18 18 C 1.54814 * 110.90659 * 299.99453 * 16 3 2 19 19 C 1.54099 * 104.18953 * 220.92535 * 18 16 3 20 20 O 1.43746 * 107.29129 * 357.97143 * 19 18 16 21 21 C 1.44382 * 106.97932 * 26.51559 * 20 19 18 22 22 H 1.08994 * 109.47043 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46625 * 300.00031 * 1 2 3 24 24 H 1.08992 * 109.47315 * 59.99673 * 1 2 3 25 25 H 1.08996 * 109.47357 * 305.00083 * 5 3 2 26 26 H 1.09002 * 109.47268 * 185.00333 * 5 3 2 27 27 H 1.09000 * 109.47112 * 59.99460 * 7 6 5 28 28 H 1.09007 * 109.46585 * 299.99935 * 7 6 5 29 29 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 30 30 H 1.08997 * 110.48807 * 339.60360 * 18 16 3 31 31 H 1.08996 * 110.48264 * 102.11421 * 18 16 3 32 32 H 1.08995 * 109.87945 * 117.39305 * 19 18 16 33 33 H 1.09001 * 109.87978 * 238.40309 * 19 18 16 34 34 H 1.09000 * 110.61978 * 201.43868 * 21 20 19 35 35 H 1.08997 * 110.61898 * 78.43369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 16 0.6064 1.9634 -2.2535 7 6 1.0532 2.5105 -3.9243 8 6 -0.1991 2.7181 -4.7366 9 1 -1.1669 2.5384 -4.2922 10 6 -0.1089 3.1313 -6.0488 11 7 1.0696 3.3498 -6.5900 12 14 -1.6609 3.3811 -7.0580 13 1 -2.8493 3.0702 -6.2237 14 1 -1.7322 4.7921 -7.5156 15 1 -1.6350 2.4791 -8.2374 16 6 3.3589 1.2632 0.7212 17 1 4.0629 0.6239 0.1886 18 6 3.1872 0.7951 2.1869 19 6 4.1364 1.7069 2.9883 20 8 4.8060 2.5607 2.0455 21 6 3.9345 2.6911 0.9018 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 2.8099 1.0320 -1.9815 26 1 2.7413 2.7273 -1.4439 27 1 1.6745 1.7523 -4.4010 28 1 1.6062 3.4480 -3.8639 29 1 1.1330 3.6402 -7.5133 30 1 2.1570 0.9353 2.5139 31 1 3.4806 -0.2495 2.2904 32 1 3.5638 2.3101 3.6928 33 1 4.8657 1.1013 3.5263 34 1 4.5007 2.9910 0.0200 35 1 3.1357 3.4037 1.1072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:41 Heat of formation + Delta-G solvation = -126.552030 kcal Electronic energy + Delta-G solvation = -15947.298416 eV Core-core repulsion = 13263.448945 eV Total energy + Delta-G solvation = -2683.849471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73635 -38.79820 -35.29948 -34.33801 -31.67605 -30.67372 -29.26634 -27.64097 -25.42195 -24.38667 -23.00177 -21.51711 -18.69089 -18.10360 -17.56249 -17.16295 -17.00240 -16.31129 -16.03825 -15.90611 -15.35801 -14.78568 -14.56721 -14.40981 -14.28793 -13.86266 -13.78648 -13.00421 -12.83595 -12.77900 -12.58759 -12.36212 -12.17662 -12.01938 -11.86454 -11.65304 -11.43822 -10.94880 -10.76706 -10.67460 -10.23163 -8.43377 -8.34406 -6.47936 0.94935 1.39138 1.39510 1.54133 1.97984 2.35634 2.67013 2.94160 3.00234 3.47059 3.84019 3.90083 3.98328 4.03609 4.19474 4.34043 4.36555 4.45423 4.51585 4.66228 4.75598 4.79600 4.86630 4.89799 4.92823 4.94222 5.06647 5.10534 5.18164 5.55717 5.86485 5.87971 6.19089 6.60245 7.20547 8.77980 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.041256 B = 0.004679 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.521540 B = 5982.303205 C = 6476.306811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.388 6.388 3 C 0.129 3.871 4 H 0.077 0.923 5 C -0.110 4.110 6 S -0.291 6.291 7 C 0.081 3.919 8 C -0.534 4.534 9 H 0.063 0.937 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.977 3.023 13 H -0.263 1.263 14 H -0.272 1.272 15 H -0.274 1.274 16 C -0.111 4.111 17 H 0.090 0.910 18 C -0.137 4.137 19 C 0.041 3.959 20 O -0.398 6.398 21 C 0.052 3.948 22 H 0.098 0.902 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.009 0.991 28 H 0.012 0.988 29 H 0.270 0.730 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -4.225 17.483 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.307 6.307 3 C 0.069 3.931 4 H 0.095 0.905 5 C -0.258 4.258 6 S -0.063 6.063 7 C -0.066 4.066 8 C -0.573 4.573 9 H 0.081 0.919 10 C -0.188 4.188 11 N -0.566 5.566 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.198 1.198 15 H -0.199 1.199 16 C -0.132 4.132 17 H 0.108 0.892 18 C -0.174 4.174 19 C -0.035 4.035 20 O -0.317 6.317 21 C -0.024 4.024 22 H 0.116 0.884 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.027 0.973 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.298 -4.410 17.767 18.450 hybrid contribution 0.354 0.508 -1.610 1.725 sum 2.652 -3.901 16.157 16.831 Atomic orbital electron populations 1.23211 0.79935 1.03714 1.01089 1.87830 1.21018 1.27060 1.94777 1.21742 0.94869 0.85406 0.91048 0.90543 1.24153 0.97583 1.04455 0.99618 1.86240 1.15382 1.89022 1.15646 1.20835 0.99136 0.96683 0.89948 1.21031 0.92273 1.47077 0.96915 0.91870 1.25942 1.00196 0.94157 0.98480 1.70070 1.25404 1.46312 1.14810 0.85215 0.78454 0.78202 0.78093 1.18744 1.19765 1.19887 1.22748 0.95140 0.98278 0.97016 0.89202 1.22858 1.00983 1.01168 0.92437 1.23364 0.95972 0.92162 0.91987 1.88858 1.43284 1.69684 1.29871 1.23640 0.94079 0.95172 0.89547 0.88386 0.92757 0.93087 0.90692 0.88960 0.97317 0.96947 0.92119 0.89988 0.89409 0.91199 0.88450 0.88374 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.57 113.37 1.20 1.65 16 2 O -0.39 -11.09 10.01 -148.98 -1.49 -12.58 16 3 C 0.13 3.40 1.75 30.60 0.05 3.45 16 4 H 0.08 1.93 7.73 -2.39 -0.02 1.91 16 5 C -0.11 -3.61 5.56 71.98 0.40 -3.21 16 6 S -0.29 -12.36 18.39 -56.49 -1.04 -13.39 16 7 C 0.08 4.36 5.70 71.24 0.41 4.77 16 8 C -0.53 -30.70 9.13 25.60 0.23 -30.47 16 9 H 0.06 3.59 7.71 -2.91 -0.02 3.57 16 10 C 0.01 0.72 5.46 84.65 0.46 1.18 16 11 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 12 Si 0.98 43.74 29.54 68.60 2.03 45.77 16 13 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 16 C -0.11 -2.44 2.88 -9.49 -0.03 -2.46 16 17 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 18 C -0.14 -2.40 6.31 31.59 0.20 -2.20 16 19 C 0.04 0.70 7.70 72.35 0.56 1.26 16 20 O -0.40 -9.20 11.52 -148.98 -1.72 -10.91 16 21 C 0.05 1.12 6.36 72.67 0.46 1.58 16 22 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.05 1.18 8.09 -2.38 -0.02 1.16 16 24 H 0.05 1.63 4.87 -11.51 -0.06 1.57 16 25 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.09 2.84 7.27 -2.39 -0.02 2.82 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.08 1.36 7.86 -2.39 -0.02 1.34 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 2.07 7.97 -2.39 -0.02 2.05 16 35 H 0.07 1.44 8.01 -2.39 -0.02 1.43 16 Total: -1.00 -64.60 298.43 3.01 -61.58 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.00 Total: 8.78 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 3.95 Total: -24.46 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.28 Total: -54.78 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -3.21 Total: -23.50 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -12.36 SS G_CDS: -1.04 Total: -13.39 kcal Total: -64.60 3.01 -61.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.969 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds