Wall clock time and date at job start Mon Mar 30 2020 04:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48508 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47288 * 300.00306 * 3 2 1 6 6 H 1.48500 * 109.46672 * 60.00546 * 3 2 1 7 7 C 1.38821 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99875 * 164.38118 * 7 2 1 9 9 N 1.36933 * 119.99588 * 344.38273 * 7 2 1 10 10 C 1.47251 * 121.35185 * 155.44462 * 9 7 2 11 11 C 1.52785 * 107.85814 * 115.73432 * 10 9 7 12 12 C 1.50588 * 110.83134 * 47.40147 * 11 10 9 13 13 C 1.37370 * 122.98225 * 340.24264 * 12 11 10 14 14 C 1.38949 * 119.94202 * 180.65456 * 13 12 11 15 15 C 1.37934 * 120.86763 * 359.58735 * 14 13 12 16 16 C 1.37942 * 119.86029 * 0.09717 * 15 14 13 17 17 C 1.39297 * 119.66077 * 0.12774 * 16 15 14 18 18 C 1.47845 * 119.85862 * 179.97438 * 17 16 15 19 19 N 1.34776 * 120.00023 * 6.27069 * 18 17 16 20 20 O 1.21554 * 119.99991 * 186.27140 * 18 17 16 21 21 C 1.46676 * 121.35647 * 335.46524 * 9 7 2 22 22 H 0.96993 * 120.00125 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.78090 * 356.14929 * 10 9 7 24 24 H 1.08995 * 109.82858 * 235.35534 * 10 9 7 25 25 H 1.09009 * 109.19586 * 167.73275 * 11 10 9 26 26 H 1.08997 * 109.20418 * 287.06467 * 11 10 9 27 27 H 1.08004 * 119.58511 * 179.68869 * 14 13 12 28 28 H 1.07998 * 120.07223 * 179.97438 * 15 14 13 29 29 H 1.07995 * 120.16781 * 180.14866 * 16 15 14 30 30 H 0.96997 * 120.00162 * 0.02562 * 19 18 17 31 31 H 0.97010 * 119.99918 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.43259 * 344.34842 * 21 9 7 33 33 H 1.08996 * 109.43356 * 104.26466 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0104 -1.2022 -0.0005 8 1 3.0604 -1.2193 -0.2524 9 7 1.3635 -2.3663 0.3182 10 6 1.8520 -3.6701 -0.1610 11 6 2.2711 -4.4903 1.0581 12 6 1.2111 -4.4416 2.1265 13 6 0.2453 -3.4660 2.1778 14 6 -0.6951 -3.4741 3.2006 15 6 -0.6802 -4.4575 4.1678 16 6 0.2794 -5.4476 4.1259 17 6 1.2289 -5.4445 3.1067 18 6 2.2597 -6.5032 3.0579 19 7 2.2050 -7.5373 3.9205 20 8 3.1566 -6.4410 2.2399 21 6 0.1557 -2.3651 1.1504 22 1 -0.4850 0.8400 0.0004 23 1 2.7084 -3.5240 -0.8194 24 1 1.0576 -4.1878 -0.6986 25 1 2.4287 -5.5259 0.7564 26 1 3.2019 -4.0881 1.4580 27 1 -1.4487 -2.7014 3.2383 28 1 -1.4171 -4.4512 4.9573 29 1 0.2942 -6.2212 4.8792 30 1 1.4891 -7.5872 4.5731 31 1 2.8816 -8.2318 3.8888 32 1 0.0647 -1.4038 1.6560 33 1 -0.7188 -2.5281 0.5206 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595904319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:24 Heat of formation + Delta-G solvation = 12.296132 kcal Electronic energy + Delta-G solvation = -17749.861354 eV Core-core repulsion = 14968.881591 eV Total energy + Delta-G solvation = -2780.979763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16024 -38.19157 -35.87477 -33.76833 -32.57929 -31.39540 -30.09671 -28.45549 -25.53011 -23.78165 -22.80288 -22.07193 -20.27580 -18.91800 -17.60825 -16.84958 -16.30488 -15.40731 -15.01375 -14.72416 -14.44893 -14.29713 -13.73319 -13.53095 -12.83616 -12.60173 -12.48184 -11.89306 -11.62119 -11.47152 -10.95347 -10.89834 -10.78103 -10.52486 -10.26637 -9.88406 -9.70396 -9.63685 -9.31747 -8.64787 -8.38455 -7.91691 -6.72222 -5.80175 -3.18893 1.21258 1.81650 3.14713 3.38673 3.46353 3.49336 3.62247 4.21940 4.50231 5.00892 5.05020 5.20339 5.37010 5.49221 5.57204 5.80254 5.86576 6.12475 6.24034 6.33155 6.39390 6.54593 6.65971 6.78641 6.86961 6.91763 7.01290 7.12771 7.20776 7.38116 7.42519 7.60038 7.80214 8.38190 8.39548 9.19597 9.82019 10.40496 11.30527 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.006930 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.751511 B = 4039.163030 C = 4570.606667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.595 5.595 10 C 0.137 3.863 11 C -0.102 4.102 12 C -0.001 4.001 13 C -0.087 4.087 14 C -0.094 4.094 15 C -0.140 4.140 16 C -0.104 4.104 17 C -0.158 4.158 18 C 0.562 3.438 19 N -0.858 5.858 20 O -0.531 6.531 21 C 0.206 3.794 22 H 0.254 0.746 23 H 0.061 0.939 24 H 0.025 0.975 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.398 0.602 31 H 0.400 0.600 32 H 0.098 0.902 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -12.111 9.387 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.011 3.989 11 C -0.140 4.140 12 C -0.002 4.002 13 C -0.089 4.089 14 C -0.113 4.113 15 C -0.158 4.158 16 C -0.123 4.123 17 C -0.161 4.161 18 C 0.350 3.650 19 N -0.423 5.423 20 O -0.409 6.409 21 C 0.080 3.920 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.227 0.773 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.843 -11.735 8.758 14.667 hybrid contribution 0.163 0.525 0.587 0.804 sum -0.680 -11.210 9.345 14.610 Atomic orbital electron populations 1.70004 1.05180 1.25443 1.55009 1.25006 0.95414 0.98340 1.01182 0.86173 0.79349 0.83770 0.77243 1.20237 1.21705 1.21583 1.19262 0.92403 0.84242 1.41354 0.91152 1.44048 1.30005 1.01628 1.56062 1.21062 0.97415 0.86975 0.93428 1.21302 0.95912 1.01694 0.95082 1.19748 0.95135 0.91037 0.94263 1.21100 0.93252 0.97261 0.97287 1.21334 0.98161 0.97983 0.93785 1.20831 0.99456 0.95781 0.99769 1.20949 0.95146 0.98852 0.97341 1.19852 0.98570 0.98280 0.99421 1.18451 0.84975 0.81530 0.80065 1.43807 1.33001 1.26840 1.38620 1.90781 1.36034 1.77494 1.36611 1.19782 0.89307 0.94007 0.88885 0.93627 0.92025 0.95734 0.89252 0.90585 0.85811 0.86160 0.86654 0.77302 0.76993 0.88385 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.23 11.09 55.49 0.62 -25.62 16 2 C 0.00 -0.05 5.00 -17.43 -0.09 -0.14 16 3 Si 0.90 21.90 29.58 -169.99 -5.03 16.88 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.80 9.70 -15.06 -0.15 -6.95 16 8 H 0.07 1.94 7.88 -52.49 -0.41 1.53 16 9 N -0.60 -15.42 2.97 -173.91 -0.52 -15.94 16 10 C 0.14 3.09 6.52 -3.74 -0.02 3.06 16 11 C -0.10 -2.10 4.43 -28.05 -0.12 -2.22 16 12 C 0.00 -0.01 5.79 -104.24 -0.60 -0.62 16 13 C -0.09 -1.79 5.81 -104.61 -0.61 -2.39 16 14 C -0.09 -1.59 9.60 -39.43 -0.38 -1.97 16 15 C -0.14 -1.95 10.03 -39.80 -0.40 -2.35 16 16 C -0.10 -1.40 9.51 -39.30 -0.37 -1.77 16 17 C -0.16 -2.62 5.88 -104.82 -0.62 -3.24 16 18 C 0.56 8.69 7.94 -12.33 -0.10 8.60 16 19 N -0.86 -8.63 8.82 30.53 0.27 -8.36 16 20 O -0.53 -10.02 13.90 5.32 0.07 -9.94 16 21 C 0.21 4.99 4.85 -5.03 -0.02 4.97 16 22 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.06 1.34 7.96 -51.93 -0.41 0.93 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.79 5.83 -51.92 -0.30 1.49 16 26 H 0.08 1.67 8.06 -51.93 -0.42 1.26 16 27 H 0.12 1.92 8.05 -52.48 -0.42 1.50 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.07 6.42 -52.49 -0.34 0.73 16 30 H 0.40 2.85 6.88 -40.82 -0.28 2.57 16 31 H 0.40 3.32 8.93 -40.82 -0.36 2.95 16 32 H 0.10 2.60 6.34 -51.93 -0.33 2.27 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -32.15 271.75 -7.66 -39.81 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.69 Total: 4.10 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.48 Total: -5.02 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.37 Total: -49.91 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.15 -7.66 -39.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.103 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds